STRINGSTRING
ymfD ymfD ymfE ymfE lit lit intE intE xisE xisE ymfI ymfI ymfJ ymfJ cohE cohE croE croE ymfL ymfL ymfM ymfM ymfR ymfR ymfQ ymfQ stfP stfP tfaP tfaP tfaE tfaE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ymfDE14 prophage; putative SAM-dependent methyltransferase. (221 aa)
ymfEE14 prophage; putative inner membrane protein. (234 aa)
litT4 phage exclusion protein; Interacts with a short DNA sequence about one-quarter of the way into the major capsid protein gene 23 of T4; general translation inhibition occurs when this late gene of the virus is expressed. Belongs to the peptidase U49 family. (297 aa)
intEE14 prophage; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. (375 aa)
xisEE14 prophage; putative excisionase; To lambdoid phages excisionases. (81 aa)
ymfIE14 prophage; uncharacterized protein. (113 aa)
ymfJE14 prophage; uncharacterized protein. (102 aa)
cohEE14 prophage; repressor protein phage e14. (224 aa)
croEE14 prophage; putative DNA-binding transcriptional regulator. (66 aa)
ymfLE14 prophage; putative DNA-binding transcriptional regulator. (185 aa)
ymfME14 prophage; uncharacterized protein. (112 aa)
ymfRUncharacterized protein YmfR; Pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related. (60 aa)
ymfQUncharacterized protein YmfQ; Pseudogene, e14 prophage;Phage or Prophage Related; To phage Mu protein gp48 and H.influenzae HI_1521. (194 aa)
stfPE14 prophage; uncharacterized protein; To E.coli YfdL and M.jannaschii MJ0347. (209 aa)
tfaPE14 prophage; uncharacterized protein; To E.coli YfdK. (137 aa)
tfaEE14 prophage; putative tail fiber assembly protein. (200 aa)
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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