STRINGSTRING
intE intE xisE xisE ymfJ ymfJ croE croE ymfL ymfL ymfM ymfM ymfR ymfR ymfQ ymfQ stfP stfP tfaP tfaP tfaE tfaE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
intEE14 prophage; Integrase from the cryptic lambdoic prophage e14. Integrase is necessary for integration of the phage into the host genome by site- specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. (375 aa)
xisEE14 prophage; putative excisionase; To lambdoid phages excisionases. (81 aa)
ymfJE14 prophage; uncharacterized protein. (102 aa)
croEE14 prophage; putative DNA-binding transcriptional regulator. (66 aa)
ymfLE14 prophage; putative DNA-binding transcriptional regulator. (185 aa)
ymfME14 prophage; uncharacterized protein. (112 aa)
ymfRUncharacterized protein YmfR; Pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related. (60 aa)
ymfQUncharacterized protein YmfQ; Pseudogene, e14 prophage;Phage or Prophage Related; To phage Mu protein gp48 and H.influenzae HI_1521. (194 aa)
stfPE14 prophage; uncharacterized protein; To E.coli YfdL and M.jannaschii MJ0347. (209 aa)
tfaPE14 prophage; uncharacterized protein; To E.coli YfdK. (137 aa)
tfaEE14 prophage; putative tail fiber assembly protein. (200 aa)
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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