STRINGSTRING
ybfD ybfD stfR stfR tfaR tfaR pinR pinR ynaE ynaE ydfK ydfK pinQ pinQ yhhI yhhI ldrC ldrC rzoR rzoR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ybfDH repeat-associated putative transposase YbfD; Pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein; Belongs to the transposase 11 family. (253 aa)
stfRRac prophage; putative tail fiber protein; Belongs to the tail fiber family. (1120 aa)
tfaRRac prophage; Tail fiber assembly protein homolog from lambdoid prophage Rac; Belongs to the tfa family. (191 aa)
pinRRac prophage; putative site-specific recombinase. (196 aa)
ynaECold shock protein, Rac prophage. (77 aa)
ydfKCold shock protein YdfK; Cryptic prophage Qin/Kim. (77 aa)
pinQQin prophage; putative site-specific recombinase; Belongs to the site-specific recombinase resolvase family. (196 aa)
yhhIH repeat-associated putative transposase YhhI; Pseudogene fragment; Belongs to the transposase 11 family. (378 aa)
ldrCSmall toxic polypeptide. (35 aa)
rzoRProphage outer membrane lipoprotein RzoR; Component of the spanin complex that disrupts the outer membrane and causes cell lysis during virus exit. The spanin complex conducts the final step in cell lysis by disrupting the outer membrane after holin and endolysin action have permeabilized the inner membrane and degraded the host peptidoglycans (By similarity). (61 aa)
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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