STRINGSTRING
ybfD ybfD pinR pinR ynaE ynaE ydfK ydfK pinQ pinQ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ybfDH repeat-associated putative transposase YbfD; Pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein; Belongs to the transposase 11 family. (253 aa)
pinRRac prophage; putative site-specific recombinase. (196 aa)
ynaECold shock protein, Rac prophage. (77 aa)
ydfKCold shock protein YdfK; Cryptic prophage Qin/Kim. (77 aa)
pinQQin prophage; putative site-specific recombinase; Belongs to the site-specific recombinase resolvase family. (196 aa)
Your Current Organism:
Escherichia coli K12
NCBI taxonomy Id: 511145
Other names: E. coli str. K-12 substr. MG1655, Escherichia coli MG1655, Escherichia coli str. K-12 substr. MG1655, Escherichia coli str. K12 substr. MG1655, Escherichia coli str. MG1655, Escherichia coli strain MG1655
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