114 items (Juglans regia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108979834	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (594 aa)
	LOC108979950	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	LOC108980552	Nuclear/nucleolar GTPase 2-like. (176 aa)
	LOC108980839	RNA-binding protein 28 isoform X1. (974 aa)
	LOC108981003	Ribosomal RNA-processing protein 14-C-like. (342 aa)
	LOC108981771	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (674 aa)
	LOC108982270	Probable rRNA-processing protein EBP2 homolog. (299 aa)
	LOC108984420	Probable DEAD-box ATP-dependent RNA helicase 48. (815 aa)
	LOC108984629	Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like. (408 aa)
	LOC108984791	Ribosome production factor 2 homolog. (315 aa)
	LOC108984884	Protein SYS1 homolog. (152 aa)
	LOC108985522	25S rRNA (Cytosine-C(5))-methyltransferase nop2-like; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (639 aa)
	LOC108985661	Nucleolar protein 16-like. (191 aa)
	LOC108986057	ERBB-3 BINDING PROTEIN 1-like. (142 aa)
	LOC108986141	DEAD-box ATP-dependent RNA helicase 27-like isoform X1. (147 aa)
	LOC108986306	Uncharacterized protein LOC108986306 isoform X1. (245 aa)
	LOC108986455	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (434 aa)
	LOC108986857	Nucleolar protein 16-like. (221 aa)
	LOC108988271	GTPase LSG1-2. (599 aa)
	LOC108988299	Probable ribosome biogenesis protein RLP24. (167 aa)
	LOC108988344	Ribosomal L1 domain-containing protein 1-like. (428 aa)
	LOC108988899	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (732 aa)
	LOC108989628	Nucleolar GTP-binding protein 1 isoform X1. (461 aa)
	LOC108989735	Protein MAK16 homolog; Belongs to the MAK16 family. (299 aa)
	LOC108990074	Uncharacterized protein LOC108990074. (136 aa)
	LOC108990164	DDT domain-containing protein DDR4-like. (722 aa)
	LOC108990277	P21-activated protein kinase-interacting protein 1-like. (340 aa)
	LOC108991715	Guanine nucleotide-binding protein-like NSN1. (608 aa)
	LOC108992626	WD repeat-containing protein DDB_G0290555. (455 aa)
	LOC108992948	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (562 aa)
	LOC108993049	Ribosome biogenesis protein BRX1-like. (314 aa)
	LOC108994511	Nucleolar complex protein 2 homolog. (727 aa)
	LOC108994543	Uncharacterized protein LOC108994543 isoform X1; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (545 aa)
	LOC108994681	LOW QUALITY PROTEIN: probable 28S rRNA (Cytosine(4447)-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (607 aa)
	LOC108994695	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	LOC108994776	Pumilio homolog 24. (655 aa)
	LOC108994921	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (511 aa)
	LOC108994931	ERBB-3 BINDING PROTEIN 1 isoform X1. (395 aa)
	LOC108995067	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	LOC108995182	ERBB-3 BINDING PROTEIN 1-like. (395 aa)
	LOC108996461	DEAD-box ATP-dependent RNA helicase 31-like isoform X1. (837 aa)
	LOC108997135	Nucleolar complex protein 2 homolog. (728 aa)
	LOC108997395	Uncharacterized protein LOC108997395. (446 aa)
	LOC108998713	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (674 aa)
	LOC108999218	DDT domain-containing protein DDR4-like isoform X1. (724 aa)
	LOC108999712	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (813 aa)
	LOC109000740	RRP15-like protein isoform X1. (306 aa)
	LOC109000760	RRP15-like protein. (310 aa)
	LOC109001111	Uncharacterized protein LOC109001111. (202 aa)
	LOC109001457	Ribosome production factor 1. (365 aa)
	LOC109001766	Nucleolar complex protein 3 homolog. (845 aa)
	LOC109003354	DAR GTPase 3, chloroplastic isoform X1. (369 aa)
	LOC109003537	Eukaryotic translation initiation factor 6-like. (172 aa)
	LOC109004025	MKI67 FHA domain-interacting nucleolar phosphoprotein-like. (125 aa)
	LOC109004229	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (187 aa)
	LOC109004748	RNA helicase. (592 aa)
	LOC109004759	Uncharacterized protein LOC109004759 isoform X1. (193 aa)
	LOC109004760	Uncharacterized protein At2g40430 isoform X1. (364 aa)
	LOC109005200	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (340 aa)
	LOC109005352	Ribosomal L1 domain-containing protein 1-like. (426 aa)
	LOC109005418	Uncharacterized protein C4F10.09c-like. (1058 aa)
	LOC109005422	Uncharacterized protein LOC109005422. (147 aa)
	LOC109005424	Uncharacterized protein C4F10.09c-like. (96 aa)
	LOC109005606	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (622 aa)
	LOC109006416	Nuclear/nucleolar GTPase 2-like. (131 aa)
	LOC109006415	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (420 aa)
	LOC109006414	Uncharacterized protein LOC109006414. (138 aa)
	LOC109006883	Notchless protein homolog. (477 aa)
	LOC109006927	Notchless protein homolog isoform X1. (150 aa)
	LOC109007051	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (226 aa)
	LOC109007233	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (469 aa)
	LOC109008752	Uncharacterized protein LOC109008752. (407 aa)
	LOC109008925	UBP1-associated proteins 1C-like. (323 aa)
	LOC109008956	Ribosomal RNA processing protein 1 homolog. (573 aa)
	LOC109009453	Ribosomal RNA processing protein 1 homolog A-like. (564 aa)
	LOC109009581	Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1. (414 aa)
	LOC109009640	Ribosomal RNA-processing protein 17-like. (80 aa)
	LOC109009847	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (195 aa)
	LOC109009882	Zinc finger protein 593-like. (119 aa)
	LOC109009881	Zinc finger protein 593-like. (119 aa)
	LOC109009884	Zinc finger protein 593-like. (81 aa)
	LOC109010429	DEAD-box ATP-dependent RNA helicase 13 isoform X1. (831 aa)
	LOC109010432	Uncharacterized protein LOC109010432. (161 aa)
	LOC109011064	P21-activated protein kinase-interacting protein 1-like. (338 aa)
	LOC109011154	tRNA (Cytosine(34)-C(5))-methyltransferase-like. (168 aa)
	LOC109012042	Putative DEAD-box ATP-dependent RNA helicase 33. (334 aa)
	LOC109013360	CCAAT/enhancer-binding protein zeta-like isoform X1. (907 aa)
	LOC109013418	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)
	LOC109013429	Ribosome biogenesis protein BRX1-like. (313 aa)
	LOC109013530	Ribosome biogenesis protein NSA2 homolog. (260 aa)
	LOC109013671	Putative DEAD-box ATP-dependent RNA helicase 29. (85 aa)
	LOC109013734	Ribosomal RNA-processing protein 17-like. (224 aa)
	LOC109013798	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (834 aa)
	LOC109013837	DEAD-box ATP-dependent RNA helicase 28-like isoform X1; Belongs to the DEAD box helicase family. (758 aa)
	LOC109013838	DEAD-box ATP-dependent RNA helicase 28-like isoform X1. (224 aa)
	LOC109014487	Protein MAK16 homolog; Belongs to the MAK16 family. (301 aa)
	LOC109014563	tRNA (Cytosine(34)-C(5))-methyltransferase-like isoform X1; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (732 aa)
	LOC109014663	DDT domain-containing protein DDR4-like. (161 aa)
	LOC109015031	Uncharacterized RNA-binding protein C1827.05c-like. (96 aa)
	LOC109016751	DEAD-box ATP-dependent RNA helicase 18-like isoform X1. (101 aa)
	LOC109016855	Uncharacterized protein At2g40430-like. (98 aa)
	LOC109016962	Putative DEAD-box ATP-dependent RNA helicase 33. (200 aa)
	LOC109017367	ERBB-3 BINDING PROTEIN 1-like. (109 aa)
	LOC109017451	Pescadillo homolog. (362 aa)
	LOC109017506	Pescadillo homolog. (362 aa)
	LOC109017449	Eukaryotic translation initiation factor 3 subunit G-like. (78 aa)
	LOC109019030	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (511 aa)
	LOC109019678	CCAAT/enhancer-binding protein zeta-like isoform X2. (795 aa)
	LOC109019968	DEAD-box ATP-dependent RNA helicase 29. (624 aa)
	LOC109021458	Peter Pan-like protein. (349 aa)
	LOC109021655	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (605 aa)
	LOC109021660	Ribosomal RNA-processing protein 14. (351 aa)
	LOC109021792	Probable ribosome biogenesis protein RLP24. (167 aa)
	LOC109022320	DEAD-box ATP-dependent RNA helicase 16. (598 aa)

Your Current Organism:

Juglans regia

NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108979834	LOC108979950	A0A2I4DG85	A0A2I4DGM7	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.741
LOC108979834	LOC108980552	A0A2I4DG85	A0A2I4DIR7	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Nuclear/nucleolar GTPase 2-like.	0.712
LOC108979834	LOC108980839	A0A2I4DG85	A0A2I4DJR6	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	RNA-binding protein 28 isoform X1.	0.859
LOC108979834	LOC108981003	A0A2I4DG85	A0A2I4DKD9	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Ribosomal RNA-processing protein 14-C-like.	0.459
LOC108979834	LOC108981771	A0A2I4DG85	A0A2I4DN43	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.872
LOC108979834	LOC108982270	A0A2I4DG85	A0A2I4DPQ9	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Probable rRNA-processing protein EBP2 homolog.	0.977
LOC108979834	LOC108984420	A0A2I4DG85	A0A2I4DXN4	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Probable DEAD-box ATP-dependent RNA helicase 48.	0.645
LOC108979834	LOC108984791	A0A2I4DG85	A0A2I4DZ18	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Ribosome production factor 2 homolog.	0.965
LOC108979834	LOC108984884	A0A2I4DG85	A0A2I4DZD6	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Protein SYS1 homolog.	0.604
LOC108979834	LOC108985661	A0A2I4DG85	A0A2I4E2F5	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Nucleolar protein 16-like.	0.770
LOC108979834	LOC108986057	A0A2I4DG85	A0A2I4E3Z9	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	ERBB-3 BINDING PROTEIN 1-like.	0.406
LOC108979834	LOC108986141	A0A2I4DG85	A0A2I4E498	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	DEAD-box ATP-dependent RNA helicase 27-like isoform X1.	0.645
LOC108979834	LOC108986306	A0A2I4DG85	A0A2I4E4V3	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein LOC108986306 isoform X1.	0.939
LOC108979834	LOC108986455	A0A2I4DG85	A0A2I4E5E6	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.960
LOC108979834	LOC108986857	A0A2I4DG85	A0A2I4E6Z8	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Nucleolar protein 16-like.	0.770
LOC108979834	LOC108988271	A0A2I4DG85	A0A2I4ECA8	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	GTPase LSG1-2.	0.738
LOC108979834	LOC108988299	A0A2I4DG85	A0A2I4ECF5	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Probable ribosome biogenesis protein RLP24.	0.905
LOC108979834	LOC108988344	A0A2I4DG85	A0A2I4ECK6	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Ribosomal L1 domain-containing protein 1-like.	0.886
LOC108979834	LOC108988899	A0A2I4DG85	A0A2I4EEK6	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.978
LOC108979834	LOC108989628	A0A2I4DG85	A0A2I4EHG7	Putative methyltransferase NSUN6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Nucleolar GTP-binding protein 1 isoform X1.	0.872