38 items (Juglans regia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108981771	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (674 aa)
	LOC108982270	Probable rRNA-processing protein EBP2 homolog. (299 aa)
	LOC108984791	Ribosome production factor 2 homolog. (315 aa)
	LOC108986455	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (434 aa)
	LOC108988299	Probable ribosome biogenesis protein RLP24. (167 aa)
	LOC108988344	Ribosomal L1 domain-containing protein 1-like. (428 aa)
	LOC108988899	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (732 aa)
	LOC108989628	Nucleolar GTP-binding protein 1 isoform X1. (461 aa)
	LOC108990074	Uncharacterized protein LOC108990074. (136 aa)
	LOC108992626	WD repeat-containing protein DDB_G0290555. (455 aa)
	LOC108993049	Ribosome biogenesis protein BRX1-like. (314 aa)
	LOC108994511	Nucleolar complex protein 2 homolog. (727 aa)
	LOC108994695	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	LOC108994776	Pumilio homolog 24. (655 aa)
	LOC108995067	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	LOC108997135	Nucleolar complex protein 2 homolog. (728 aa)
	LOC108998713	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (674 aa)
	LOC108999712	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (813 aa)
	LOC109001457	Ribosome production factor 1. (365 aa)
	LOC109001766	Nucleolar complex protein 3 homolog. (845 aa)
	LOC109003354	DAR GTPase 3, chloroplastic isoform X1. (369 aa)
	LOC109004025	MKI67 FHA domain-interacting nucleolar phosphoprotein-like. (125 aa)
	LOC109005200	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (340 aa)
	LOC109005352	Ribosomal L1 domain-containing protein 1-like. (426 aa)
	LOC109007051	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (226 aa)
	LOC109008752	Uncharacterized protein LOC109008752. (407 aa)
	LOC109009453	Ribosomal RNA processing protein 1 homolog A-like. (564 aa)
	LOC109009847	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (195 aa)
	LOC109013418	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)
	LOC109013429	Ribosome biogenesis protein BRX1-like. (313 aa)
	LOC109013530	Ribosome biogenesis protein NSA2 homolog. (260 aa)
	LOC109013798	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (834 aa)
	LOC109014487	Protein MAK16 homolog; Belongs to the MAK16 family. (301 aa)
	LOC109015031	Uncharacterized RNA-binding protein C1827.05c-like. (96 aa)
	LOC109017451	Pescadillo homolog. (362 aa)
	LOC109017449	Eukaryotic translation initiation factor 3 subunit G-like. (78 aa)
	LOC109021655	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (605 aa)
	LOC109021792	Probable ribosome biogenesis protein RLP24. (167 aa)

Your Current Organism:

Juglans regia

NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108981771	LOC108982270	A0A2I4DN43	A0A2I4DPQ9	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Probable rRNA-processing protein EBP2 homolog.	0.986
LOC108981771	LOC108984791	A0A2I4DN43	A0A2I4DZ18	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosome production factor 2 homolog.	0.990
LOC108981771	LOC108986455	A0A2I4DN43	A0A2I4E5E6	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.988
LOC108981771	LOC108988299	A0A2I4DN43	A0A2I4ECF5	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Probable ribosome biogenesis protein RLP24.	0.978
LOC108981771	LOC108988344	A0A2I4DN43	A0A2I4ECK6	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosomal L1 domain-containing protein 1-like.	0.932
LOC108981771	LOC108988899	A0A2I4DN43	A0A2I4EEK6	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.990
LOC108981771	LOC108989628	A0A2I4DN43	A0A2I4EHG7	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Nucleolar GTP-binding protein 1 isoform X1.	0.900
LOC108981771	LOC108990074	A0A2I4DN43	A0A2I4EJ87	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Uncharacterized protein LOC108990074.	0.976
LOC108981771	LOC108992626	A0A2I4DN43	A0A2I4ETS4	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	WD repeat-containing protein DDB_G0290555.	0.981
LOC108981771	LOC108993049	A0A2I4DN43	A0A2I4EVF5	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosome biogenesis protein BRX1-like.	0.970
LOC108981771	LOC108994511	A0A2I4DN43	A0A2I4F0X7	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Nucleolar complex protein 2 homolog.	0.961
LOC108981771	LOC108994695	A0A2I4DN43	A0A2I4F1M7	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.959
LOC108981771	LOC108994776	A0A2I4DN43	A0A2I4F1Y2	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Pumilio homolog 24.	0.968
LOC108981771	LOC108995067	A0A2I4DN43	A0A2I4F3A0	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.959
LOC108981771	LOC108997135	A0A2I4DN43	A0A2I4FAZ3	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Nucleolar complex protein 2 homolog.	0.961
LOC108981771	LOC108998713	A0A2I4DN43	A0A2I4FH16	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.900
LOC108981771	LOC108999712	A0A2I4DN43	A0A2I4FKJ6	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.987
LOC108981771	LOC109001457	A0A2I4DN43	A0A2I4FRK6	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosome production factor 1.	0.968
LOC108981771	LOC109001766	A0A2I4DN43	A0A2I4FST4	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Nucleolar complex protein 3 homolog.	0.988
LOC108981771	LOC109003354	A0A2I4DN43	A0A2I4FZC5	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	DAR GTPase 3, chloroplastic isoform X1.	0.978