STRINGSTRING
LOC108995553 LOC108995553 LOC108996548 LOC108996548 LOC108997047 LOC108997047 LOC108997778 LOC108997778 LOC108997829 LOC108997829 LOC108998950 LOC108998950 LOC108999490 LOC108999490 LOC109013863 LOC109013863 LOC109013900 LOC109013900 LOC109011455 LOC109011455 LOC109015076 LOC109015076 LOC109015648 LOC109015648 LOC109015828 LOC109015828 LOC109015989 LOC109015989 LOC109016399 LOC109016399 LOC109017175 LOC109017175 LOC109017262 LOC109017262 LOC109017848 LOC109017848 LOC109017967 LOC109017967 LOC109018407 LOC109018407 LOC109018855 LOC109018855 LOC109019443 LOC109019443 LOC109020755 LOC109020755 LOC109021262 LOC109021262 LOC109011588 LOC109011588 LOC109012896 LOC109012896 LOC108984238 LOC108984238 LOC108984445 LOC108984445 LOC108985067 LOC108985067 LOC108985664 LOC108985664 LOC108985948 LOC108985948 LOC108986882 LOC108986882 LOC108987064 LOC108987064 LOC108987285 LOC108987285 LOC108988324 LOC108988324 LOC108989110 LOC108989110 LOC108989695 LOC108989695 LOC108990461 LOC108990461 LOC108990535 LOC108990535 LOC108991679 LOC108991679 LOC108991909 LOC108991909 LOC108992018 LOC108992018 LOC108992231 LOC108992231 LOC108993284 LOC108993284 LOC108993574 LOC108993574 LOC108993566 LOC108993566 LOC108993937 LOC108993937 LOC108993956 LOC108993956 LOC108979482 LOC108979482 LOC108979820 LOC108979820 LOC108980646 LOC108980646 LOC108981830 LOC108981830 LOC108982724 LOC108982724 LOC108983096 LOC108983096 LOC108983226 LOC108983226 LOC108983354 LOC108983354 LOC108983870 LOC108983870 LOC108979123 LOC108979123 LOC109011452 LOC109011452 LOC109011460 LOC109011460 LOC109000192 LOC109000192 LOC109000236 LOC109000236 LOC109000354 LOC109000354 LOC109000409 LOC109000409 LOC109000464 LOC109000464 LOC108979027 LOC108979027 LOC109001967 LOC109001967 LOC109002140 LOC109002140 LOC109002378 LOC109002378 LOC109002741 LOC109002741 LOC109002829 LOC109002829 LOC109003261 LOC109003261 LOC109003636 LOC109003636 LOC109004843 LOC109004843 LOC109004959 LOC109004959 LOC109006472 LOC109006472 LOC109007015 LOC109007015 LOC109007347 LOC109007347 LOC109008975 LOC109008975 LOC109009037 LOC109009037 LOC109009389 LOC109009389 LOC109009716 LOC109009716 LOC109009719 LOC109009719 LOC109009978 LOC109009978 LOC109009976 LOC109009976 LOC108994257 LOC108994257 LOC109010204 LOC109010204 LOC109010889 LOC109010889 LOC109010925 LOC109010925 LOC109011401 LOC109011401 LOC109011422 LOC109011422 LOC108994471 LOC108994471 LOC108994736 LOC108994736 LOC108994898 LOC108994898
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC108995553Uncharacterized protein LOC108995553 isoform X1. (1837 aa)
LOC108996548Enhancer of mRNA-decapping protein 4-like. (409 aa)
LOC108997047mRNA-decapping enzyme subunit 2-like. (323 aa)
LOC108997778Probable CCR4-associated factor 1 homolog 11. (280 aa)
LOC108997829Probable CCR4-associated factor 1 homolog 11. (280 aa)
LOC108998950mRNA-decapping enzyme-like protein. (371 aa)
LOC108999490Protein SMG7-like. (964 aa)
LOC109013863U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
LOC109013900UTP:RNA uridylyltransferase 1-like. (765 aa)
LOC109011455Regulator of nonsense transcripts 1 homolog. (1286 aa)
LOC109015076La-related protein 1A-like. (155 aa)
LOC109015648Polypyrimidine tract-binding protein homolog 3-like. (385 aa)
LOC109015828Probable CCR4-associated factor 1 homolog 11. (176 aa)
LOC109015989CCR4-NOT transcription complex subunit 1-like isoform X1. (2405 aa)
LOC109016399Polypyrimidine tract-binding protein homolog 2-like. (93 aa)
LOC109017175Protein decapping 5-like isoform X1. (135 aa)
LOC109017262U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (109 aa)
LOC109017848DNA-directed RNA polymerase II subunit RPB7. (176 aa)
LOC109017967Probable CCR4-associated factor 1 homolog 7. (274 aa)
LOC109018407Protein MARD1-like. (284 aa)
LOC109018855Probable CCR4-associated factor 1 homolog 7. (274 aa)
LOC109019443Probable NOT transcription complex subunit VIP2. (567 aa)
LOC109020755U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
LOC109021262Probable CCR4-associated factor 1 homolog 11. (280 aa)
LOC109011588Protein SMG7-like. (984 aa)
LOC109012896Probable CCR4-associated factor 1 homolog 7. (274 aa)
LOC108984238Polypyrimidine tract-binding protein homolog 3. (443 aa)
LOC108984445Cell differentiation protein RCD1 homolog isoform X1. (322 aa)
LOC108985067Polypyrimidine tract-binding protein homolog 2-like. (446 aa)
LOC108985664U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (148 aa)
LOC108985948Polypyrimidine tract-binding protein homolog 1 isoform X1. (466 aa)
LOC108986882U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (150 aa)
LOC108987064Protein decapping 5-like. (573 aa)
LOC108987285Uncharacterized protein LOC108987285. (154 aa)
LOC108988324DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1133 aa)
LOC108989110DNA-directed RNA polymerase II subunit 4. (138 aa)
LOC108989695La-related protein 1A isoform X1. (912 aa)
LOC108990461Polypyrimidine tract-binding protein homolog 1-like isoform X1. (473 aa)
LOC108990535CCR4-NOT transcription complex subunit 1-like isoform X1. (2410 aa)
LOC108991679Uncharacterized protein LOC108991679 isoform X1. (1832 aa)
LOC108991909Protein HESO1-like. (426 aa)
LOC108992018Uncharacterized protein LOC108992018. (497 aa)
LOC108992231Probable CCR4-associated factor 1 homolog 7. (274 aa)
LOC108993284Protein decapping 5-like isoform X1. (608 aa)
LOC108993574Uncharacterized protein LOC108993574 isoform X1. (805 aa)
LOC108993566Protein PAT1 homolog 1-like. (756 aa)
LOC108993937Cell differentiation protein RCD1 homolog isoform X2. (319 aa)
LOC108993956Probable NOT transcription complex subunit VIP2. (558 aa)
LOC1089794825'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (909 aa)
LOC108979820Polypyrimidine tract-binding protein homolog 3-like. (213 aa)
LOC108980646Cell differentiation protein RCD1 homolog isoform X1. (318 aa)
LOC108981830UTP:RNA uridylyltransferase 1-like. (780 aa)
LOC108982724Polypyrimidine tract-binding protein homolog 2-like isoform X1. (446 aa)
LOC108983096Decapping 5-like protein. (573 aa)
LOC108983226Probable CCR4-associated factor 1 homolog 11. (284 aa)
LOC108983354Protein HESO1-like isoform X1. (426 aa)
LOC108983870RNA demethylase ALKBH5-like. (542 aa)
LOC108979123Probable NOT transcription complex subunit VIP2 isoform X1. (664 aa)
LOC109011452Regulator of nonsense transcripts 1 homolog isoform X1. (1286 aa)
LOC109011460Protein PAT1 homolog 1 isoform X1. (827 aa)
LOC109000192Enhancer of mRNA-decapping protein 4-like. (971 aa)
LOC109000236mRNA-decapping enzyme subunit 2-like. (199 aa)
LOC109000354Uncharacterized protein LOC109000354. (134 aa)
LOC109000409General negative regulator of transcription subunit 3 isoform X1. (888 aa)
LOC109000464Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (991 aa)
LOC108979027CCR4-NOT transcription complex subunit 1-like. (224 aa)
LOC109001967U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
LOC109002140mRNA-decapping enzyme-like protein. (370 aa)
LOC109002378Probable CCR4-associated factor 1 homolog 11 isoform X2. (280 aa)
LOC109002741Protein decapping 5 isoform X1. (600 aa)
LOC109002829U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
LOC109003261Protein SMG7-like. (210 aa)
LOC109003636Enhancer of mRNA-decapping protein 4-like isoform X1. (1346 aa)
LOC109004843mRNA-decapping enzyme-like protein. (370 aa)
LOC109004959U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
LOC109006472Sm-like protein LSM36B. (91 aa)
LOC109007015Uncharacterized protein LOC109007015 isoform X1. (447 aa)
LOC109007347Protein SMG7. (986 aa)
LOC109008975mRNA-decapping enzyme subunit 2-like. (328 aa)
LOC109009037DEAD-box ATP-dependent RNA helicase 8-like; Belongs to the DEAD box helicase family. (500 aa)
LOC109009389DEAD-box ATP-dependent RNA helicase 8-like; Belongs to the DEAD box helicase family. (502 aa)
LOC109009716Putative F-box protein At1g65770. (376 aa)
LOC109009719Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (952 aa)
LOC109009978Polypyrimidine tract-binding protein homolog 3-like. (648 aa)
LOC109009976Polypyrimidine tract-binding protein homolog 3-like. (306 aa)
LOC1089942575'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (992 aa)
LOC109010204Probable CCR4-associated factor 1 homolog 7. (274 aa)
LOC109010889Putative F-box protein At1g65770. (318 aa)
LOC109010925Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
LOC109011401Polypyrimidine tract-binding protein homolog 3-like isoform X1. (443 aa)
LOC109011422U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
LOC108994471Sm-like protein LSM2. (65 aa)
LOC108994736Uncharacterized protein LOC108994736. (117 aa)
LOC108994898Enhancer of mRNA-decapping protein 4-like. (1412 aa)
Your Current Organism:
Juglans regia
NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.
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