142 items (Juglans regia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109007051	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (226 aa)
	LOC109007233	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (469 aa)
	LOC109008741	Zinc finger HIT domain-containing protein 2 isoform X1. (409 aa)
	LOC109008952	Uncharacterized protein LOC109008952. (160 aa)
	LOC109008995	60S acidic ribosomal protein P0-like. (181 aa)
	LOC109009581	Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1. (414 aa)
	LOC109009833	60S acidic ribosomal protein P0-like. (220 aa)
	LOC109009837	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (321 aa)
	LOC109009847	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (195 aa)
	LOC109010432	Uncharacterized protein LOC109010432. (161 aa)
	LOC109010760	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	LOC109010807	60S ribosomal protein L7-4-like. (164 aa)
	LOC109010808	60S ribosomal protein L7-4-like. (170 aa)
	LOC108979068	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (157 aa)
	LOC108979656	60S ribosomal protein L7-2-like. (281 aa)
	LOC108979950	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	LOC108980032	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (321 aa)
	LOC108980686	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (309 aa)
	LOC108981003	Ribosomal RNA-processing protein 14-C-like. (342 aa)
	LOC108981168	DEAD-box ATP-dependent RNA helicase 39-like. (603 aa)
	LOC108981357	60S ribosomal protein L14-2-like. (134 aa)
	LOC108981771	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (674 aa)
	LOC108982270	Probable rRNA-processing protein EBP2 homolog. (299 aa)
	LOC109021096	60S ribosomal protein L7-2-like. (230 aa)
	LOC109021246	60S ribosomal protein L7-2-like. (197 aa)
	LOC109015031	Uncharacterized RNA-binding protein C1827.05c-like. (96 aa)
	LOC109021458	Peter Pan-like protein. (349 aa)
	LOC109021655	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (605 aa)
	LOC109021660	Ribosomal RNA-processing protein 14. (351 aa)
	LOC109021767	60S ribosomal protein L7-2. (148 aa)
	LOC109021792	Probable ribosome biogenesis protein RLP24. (167 aa)
	LOC109015389	60S ribosomal protein L7-2-like. (123 aa)
	LOC109015801	DEAD-box ATP-dependent RNA helicase 39-like. (121 aa)
	LOC109016855	Uncharacterized protein At2g40430-like. (98 aa)
	LOC109016895	Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like. (111 aa)
	LOC109016908	Uncharacterized protein LOC109016908. (119 aa)
	LOC109021970	60S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family. (154 aa)
	LOC109017270	60S ribosomal protein L10-like. (204 aa)
	LOC109017451	Pescadillo homolog. (362 aa)
	LOC109017506	Pescadillo homolog. (362 aa)
	LOC109017943	60S ribosomal protein L7-4-like. (139 aa)
	LOC109017998	Uncharacterized protein LOC109017998 isoform X1. (651 aa)
	LOC109018230	DEAD-box ATP-dependent RNA helicase 39-like. (168 aa)
	LOC109018396	Uncharacterized protein LOC109018396. (247 aa)
	LOC109018453	60S ribosomal protein L7-2-like. (105 aa)
	LOC109018579	60S ribosomal protein L7-2-like. (205 aa)
	LOC109019150	60S ribosomal protein L23a-2; Belongs to the universal ribosomal protein uL23 family. (154 aa)
	LOC109019287	60S ribosomal protein L7-2-like. (140 aa)
	LOC109019399	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (105 aa)
	LOC109019864	60S ribosomal protein L35a-1-like. (112 aa)
	LOC109019974	60S ribosomal protein L7-2-like. (246 aa)
	LOC108982817	P21-activated protein kinase-interacting protein 1-like. (187 aa)
	LOC108983821	Uncharacterized protein LOC108983821 isoform X1. (2605 aa)
	LOC108984551	60S ribosomal protein L7a-1. (259 aa)
	LOC108999265	Polynucleotide 5'-hydroxyl-kinase NOL9. (378 aa)
	LOC108999712	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (813 aa)
	LOC109000180	60S ribosomal protein L7-2-like. (132 aa)
	LOC109000592	60S ribosomal protein L7-4-like. (175 aa)
	LOC109000740	RRP15-like protein isoform X1. (306 aa)
	LOC109000760	RRP15-like protein. (310 aa)
	LOC109001111	Uncharacterized protein LOC109001111. (202 aa)
	LOC109001457	Ribosome production factor 1. (365 aa)
	LOC109001513	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (233 aa)
	LOC108984598	60S ribosomal protein L7-1. (245 aa)
	LOC108984629	Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like. (408 aa)
	LOC108984791	Ribosome production factor 2 homolog. (315 aa)
	LOC108985661	Nucleolar protein 16-like. (191 aa)
	LOC108986141	DEAD-box ATP-dependent RNA helicase 27-like isoform X1. (147 aa)
	LOC108986455	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (434 aa)
	LOC108987080	60S ribosomal protein L7a-1-like. (259 aa)
	LOC108987353	60S ribosomal protein L7-1-like isoform X1. (258 aa)
	LOC108987653	60S ribosomal protein L7-1-like isoform X1. (258 aa)
	LOC108987972	60S ribosomal protein L6-like. (233 aa)
	LOC108988299	Probable ribosome biogenesis protein RLP24. (167 aa)
	LOC108988344	Ribosomal L1 domain-containing protein 1-like. (428 aa)
	LOC108988389	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (380 aa)
	LOC108988566	60S ribosomal protein L26-1-like. (146 aa)
	LOC108988899	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (732 aa)
	LOC108989628	Nucleolar GTP-binding protein 1 isoform X1. (461 aa)
	LOC108989735	Protein MAK16 homolog; Belongs to the MAK16 family. (299 aa)
	LOC108990277	P21-activated protein kinase-interacting protein 1-like. (340 aa)
	LOC108990724	Zinc finger HIT domain-containing protein 3-like isoform X1. (161 aa)
	LOC108990790	DEAD-box ATP-dependent RNA helicase 27-like; Belongs to the DEAD box helicase family. (436 aa)
	LOC108990990	60S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family. (154 aa)
	LOC108991213	60S ribosomal protein L14-1. (134 aa)
	LOC108991444	Protein SLOW GREEN 1, chloroplastic-like. (349 aa)
	LOC108991888	60S ribosomal protein L35a-1. (112 aa)
	LOC108991896	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (321 aa)
	LOC108992626	WD repeat-containing protein DDB_G0290555. (455 aa)
	LOC108992758	Uncharacterized protein LOC108992758 isoform X1. (419 aa)
	LOC108993049	Ribosome biogenesis protein BRX1-like. (314 aa)
	LOC108994511	Nucleolar complex protein 2 homolog. (727 aa)
	LOC108994543	Uncharacterized protein LOC108994543 isoform X1; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (545 aa)
	LOC108994695	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	LOC108995067	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	LOC108995920	Probable 60S ribosomal protein L14. (97 aa)
	LOC108996484	60S ribosomal protein L35-like. (123 aa)
	LOC108997135	Nucleolar complex protein 2 homolog. (728 aa)
	LOC109011064	P21-activated protein kinase-interacting protein 1-like. (338 aa)
	LOC109010804	60S ribosomal protein L7-4-like. (212 aa)
	LOC109002068	Uncharacterized protein LOC109002068 isoform X1. (652 aa)
	LOC108998713	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (674 aa)
	LOC109002003	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5488 aa)
	LOC109020229	DEAD-box ATP-dependent RNA helicase 39-like. (215 aa)
	LOC109020362	Zinc finger HIT domain-containing protein 3-like isoform X1. (161 aa)
	LOC109020863	60S ribosomal protein L10. (220 aa)
	LOC109003019	60S ribosomal protein L35. (123 aa)
	LOC109003029	60S ribosomal protein L23a-2-like; Belongs to the universal ribosomal protein uL23 family. (154 aa)
	LOC109003313	DEAD-box ATP-dependent RNA helicase 27-like. (92 aa)
	LOC109003312	DEAD-box ATP-dependent RNA helicase 27-like. (229 aa)
	LOC109003317	DEAD-box ATP-dependent RNA helicase 27-like; Belongs to the DEAD box helicase family. (437 aa)
	LOC109003314	RNA helicase. (523 aa)
	LOC109003537	Eukaryotic translation initiation factor 6-like. (172 aa)
	LOC109004025	MKI67 FHA domain-interacting nucleolar phosphoprotein-like. (125 aa)
	LOC109004257	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (125 aa)
	LOC109004304	60S ribosomal protein L6-1-like. (215 aa)
	LOC109004305	60S ribosomal protein L6-1-like. (133 aa)
	LOC109004759	Uncharacterized protein LOC109004759 isoform X1. (193 aa)
	LOC109004760	Uncharacterized protein At2g40430 isoform X1. (364 aa)
	LOC109004837	Box C/D snoRNA protein 1. (413 aa)
	LOC109005200	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (340 aa)
	LOC109005352	Ribosomal L1 domain-containing protein 1-like. (426 aa)
	LOC109011499	60S ribosomal protein L7-2-like. (140 aa)
	LOC109013418	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)
	LOC109013429	Ribosome biogenesis protein BRX1-like. (313 aa)
	LOC109013530	Ribosome biogenesis protein NSA2 homolog. (260 aa)
	LOC109013798	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (834 aa)
	LOC109014123	Uncharacterized protein LOC109014123. (222 aa)
	LOC109014122	Uncharacterized protein LOC109014122 isoform X1. (421 aa)
	LOC109014351	60S ribosomal protein L5. (300 aa)
	LOC109014487	Protein MAK16 homolog; Belongs to the MAK16 family. (301 aa)
	LOC109005358	Protein SLOW GREEN 1, chloroplastic. (375 aa)
	LOC109005687	60S ribosomal protein L26-1. (146 aa)
	LOC109005829	60S ribosomal protein L5-like. (299 aa)
	LOC109006062	Zinc finger HIT domain-containing protein 3-like isoform X1. (175 aa)
	LOC109006184	60S ribosomal protein L7-2-like. (246 aa)
	LOC109006247	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	LOC109006384	60S ribosomal protein L35-like. (123 aa)
	LOC109006530	Uncharacterized protein LOC109006530 isoform X1. (199 aa)
	LOC109006690	60S ribosomal protein L10-like. (224 aa)
	LOC109006883	Notchless protein homolog. (477 aa)
	LOC109006927	Notchless protein homolog isoform X1. (150 aa)

Your Current Organism:

Juglans regia

NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108979068	LOC108979656	A0A2I4DDI2	A0A2I4DFI2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	60S ribosomal protein L7-2-like.	0.667
LOC108979068	LOC108979950	A0A2I4DDI2	A0A2I4DGM7	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.745
LOC108979068	LOC108980032	A0A2I4DDI2	A0A2I4DGW4	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.751
LOC108979068	LOC108980686	A0A2I4DDI2	A0A2I4DJA5	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.751
LOC108979068	LOC108981003	A0A2I4DDI2	A0A2I4DKD9	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosomal RNA-processing protein 14-C-like.	0.813
LOC108979068	LOC108981168	A0A2I4DDI2	A0A2I4DKX3	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	DEAD-box ATP-dependent RNA helicase 39-like.	0.473
LOC108979068	LOC108981357	A0A2I4DDI2	A0A2I4DLI6	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	60S ribosomal protein L14-2-like.	0.711
LOC108979068	LOC108981771	A0A2I4DDI2	A0A2I4DN43	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.696
LOC108979068	LOC108982270	A0A2I4DDI2	A0A2I4DPQ9	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Probable rRNA-processing protein EBP2 homolog.	0.981
LOC108979068	LOC108983821	A0A2I4DDI2	A0A2I4DVG8	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Uncharacterized protein LOC108983821 isoform X1.	0.623
LOC108979068	LOC108984598	A0A2I4DDI2	A0A2I4DYC8	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	60S ribosomal protein L7-1.	0.667
LOC108979068	LOC108984629	A0A2I4DDI2	A0A2I4DYH5	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like.	0.449
LOC108979068	LOC108984791	A0A2I4DDI2	A0A2I4DZ18	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosome production factor 2 homolog.	0.983
LOC108979068	LOC108985661	A0A2I4DDI2	A0A2I4E2F5	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Nucleolar protein 16-like.	0.676
LOC108979068	LOC108986141	A0A2I4DDI2	A0A2I4E498	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	DEAD-box ATP-dependent RNA helicase 27-like isoform X1.	0.583
LOC108979068	LOC108986455	A0A2I4DDI2	A0A2I4E5E6	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.946
LOC108979068	LOC108987353	A0A2I4DDI2	A0A2I4E8S7	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	60S ribosomal protein L7-1-like isoform X1.	0.667
LOC108979068	LOC108987653	A0A2I4DDI2	A0A2I4E9S7	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	60S ribosomal protein L7-1-like isoform X1.	0.667
LOC108979068	LOC108987972	A0A2I4DDI2	A0A2I4EB32	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	60S ribosomal protein L6-like.	0.711
LOC108979068	LOC108988299	A0A2I4DDI2	A0A2I4ECF5	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Probable ribosome biogenesis protein RLP24.	0.938