27 items (Juglans regia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109019371	Nuclear pore complex protein NUP96. (1070 aa)
	LOC109020373	Casein kinase 1-like protein HD16. (218 aa)
	LOC108983885	Nuclear pore complex protein NUP96-like. (152 aa)
	LOC108983721	Regulator of nonsense transcripts UPF3-like isoform X1. (533 aa)
	LOC108999547	Uncharacterized protein LOC108999547. (242 aa)
	LOC108979317	Transcription factor VOZ1-like. (323 aa)
	LOC109022006	Transcription factor VOZ1-like isoform X1. (481 aa)
	LOC108997084	Regulator of nonsense transcripts UPF2. (1195 aa)
	LOC108981497	Cryptochrome-1-like. (646 aa)
	LOC109001394	Protein LHY-like. (768 aa)
	LOC109001683	Casein kinase 1-like protein HD16. (681 aa)
	LOC109001957	Uncharacterized protein. (1360 aa)
	LOC109004403	Transcription factor VOZ1-like isoform X1. (482 aa)
	LOC109004967	Histone-lysine N-methyltransferase 2D isoform X1. (1356 aa)
	LOC108994638	Nuclear cap-binding protein subunit 1. (864 aa)
	LOC109006217	Regulator of nonsense transcripts UPF3-like. (489 aa)
	LOC109007186	Casein kinase 1-like protein HD16 isoform X1. (467 aa)
	LOC109007538	Uncharacterized protein LOC109007538. (1060 aa)
	LOC109011452	Regulator of nonsense transcripts 1 homolog isoform X1. (1286 aa)
	LOC109011455	Regulator of nonsense transcripts 1 homolog. (1286 aa)
	LOC109015060	Casein kinase 1-like protein HD16. (80 aa)
	LOC109017217	Transcription factor VOZ1-like. (358 aa)
	LOC109018454	Regulator of nonsense transcripts UPF3-like. (182 aa)
	LOC108993720	Transcription factor VOZ1-like. (491 aa)
	LOC108991067	Cryptochrome-1-like. (644 aa)
	LOC108988921	Regulator of nonsense transcripts UPF3-like isoform X1. (564 aa)
	LOC108988289	Protein LHY-like isoform X1. (734 aa)

Your Current Organism:

Juglans regia

NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108981497	LOC108991067	A0A2I4DM77	A0A2I4EMY1	Cryptochrome-1-like.	Cryptochrome-1-like.	0.900
LOC108983721	LOC108983885	A0A2I4DV30	A0A2I4DVP3	Regulator of nonsense transcripts UPF3-like isoform X1.	Nuclear pore complex protein NUP96-like.	0.461
LOC108983721	LOC108988921	A0A2I4DV30	A0A2I4EEP7	Regulator of nonsense transcripts UPF3-like isoform X1.	Regulator of nonsense transcripts UPF3-like isoform X1.	0.901
LOC108983721	LOC108994638	A0A2I4DV30	A0A2I4F1E8	Regulator of nonsense transcripts UPF3-like isoform X1.	Nuclear cap-binding protein subunit 1.	0.825
LOC108983721	LOC108997084	A0A2I4DV30	A0A2I4FAR4	Regulator of nonsense transcripts UPF3-like isoform X1.	Regulator of nonsense transcripts UPF2.	0.997
LOC108983721	LOC109011452	A0A2I4DV30	A0A2I4GWD1	Regulator of nonsense transcripts UPF3-like isoform X1.	Regulator of nonsense transcripts 1 homolog isoform X1.	0.933
LOC108983721	LOC109011455	A0A2I4DV30	A0A2I4GWE8	Regulator of nonsense transcripts UPF3-like isoform X1.	Regulator of nonsense transcripts 1 homolog.	0.986
LOC108983721	LOC109018454	A0A2I4DV30	A0A2I4HJ16	Regulator of nonsense transcripts UPF3-like isoform X1.	Regulator of nonsense transcripts UPF3-like.	0.901
LOC108983721	LOC109019371	A0A2I4DV30	A0A2I4HM13	Regulator of nonsense transcripts UPF3-like isoform X1.	Nuclear pore complex protein NUP96.	0.461
LOC108983885	LOC108983721	A0A2I4DVP3	A0A2I4DV30	Nuclear pore complex protein NUP96-like.	Regulator of nonsense transcripts UPF3-like isoform X1.	0.461
LOC108983885	LOC108988921	A0A2I4DVP3	A0A2I4EEP7	Nuclear pore complex protein NUP96-like.	Regulator of nonsense transcripts UPF3-like isoform X1.	0.461
LOC108983885	LOC108994638	A0A2I4DVP3	A0A2I4F1E8	Nuclear pore complex protein NUP96-like.	Nuclear cap-binding protein subunit 1.	0.671
LOC108983885	LOC109006217	A0A2I4DVP3	A0A2I4GAQ2	Nuclear pore complex protein NUP96-like.	Regulator of nonsense transcripts UPF3-like.	0.461
LOC108983885	LOC109018454	A0A2I4DVP3	A0A2I4HJ16	Nuclear pore complex protein NUP96-like.	Regulator of nonsense transcripts UPF3-like.	0.461
LOC108988289	LOC109001394	A0A2I4ECC8	A0A2I4FRF5	Protein LHY-like isoform X1.	Protein LHY-like.	0.901
LOC108988921	LOC108983721	A0A2I4EEP7	A0A2I4DV30	Regulator of nonsense transcripts UPF3-like isoform X1.	Regulator of nonsense transcripts UPF3-like isoform X1.	0.901
LOC108988921	LOC108983885	A0A2I4EEP7	A0A2I4DVP3	Regulator of nonsense transcripts UPF3-like isoform X1.	Nuclear pore complex protein NUP96-like.	0.461
LOC108988921	LOC108994638	A0A2I4EEP7	A0A2I4F1E8	Regulator of nonsense transcripts UPF3-like isoform X1.	Nuclear cap-binding protein subunit 1.	0.825
LOC108988921	LOC108997084	A0A2I4EEP7	A0A2I4FAR4	Regulator of nonsense transcripts UPF3-like isoform X1.	Regulator of nonsense transcripts UPF2.	0.997
LOC108988921	LOC109011452	A0A2I4EEP7	A0A2I4GWD1	Regulator of nonsense transcripts UPF3-like isoform X1.	Regulator of nonsense transcripts 1 homolog isoform X1.	0.933