6 items (Juglans regia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109008784	Tryptophan synthase alpha chain-like; Belongs to the TrpA family. (314 aa)
	LOC108994562	Tryptophan synthase alpha chain, chloroplastic-like. (149 aa)
	LOC108996052	Tryptophan synthase alpha chain-like isoform X1; Belongs to the TrpA family. (314 aa)
	LOC108993963	GDP-L-galactose phosphorylase 2. (444 aa)
	LOC108987964	GDP-L-galactose phosphorylase 2-like. (437 aa)
	LOC108984491	GDP-L-galactose phosphorylase 2-like. (449 aa)

Your Current Organism:

Juglans regia

NCBI taxonomy Id: 51240
Other names: English walnut, J. regia, Juglans regia L.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108984491	LOC108987964	A0A2I4DXY9	A0A2I4EB20	GDP-L-galactose phosphorylase 2-like.	GDP-L-galactose phosphorylase 2-like.	0.901
LOC108984491	LOC108993963	A0A2I4DXY9	A0A2I4EYW9	GDP-L-galactose phosphorylase 2-like.	GDP-L-galactose phosphorylase 2.	0.900
LOC108987964	LOC108984491	A0A2I4EB20	A0A2I4DXY9	GDP-L-galactose phosphorylase 2-like.	GDP-L-galactose phosphorylase 2-like.	0.901
LOC108987964	LOC108993963	A0A2I4EB20	A0A2I4EYW9	GDP-L-galactose phosphorylase 2-like.	GDP-L-galactose phosphorylase 2.	0.901
LOC108993963	LOC108984491	A0A2I4EYW9	A0A2I4DXY9	GDP-L-galactose phosphorylase 2.	GDP-L-galactose phosphorylase 2-like.	0.900
LOC108993963	LOC108987964	A0A2I4EYW9	A0A2I4EB20	GDP-L-galactose phosphorylase 2.	GDP-L-galactose phosphorylase 2-like.	0.901
LOC108996052	LOC109008784	A0A2I4F6R9	A0A2I4GKX3	Tryptophan synthase alpha chain-like isoform X1; Belongs to the TrpA family.	Tryptophan synthase alpha chain-like; Belongs to the TrpA family.	0.900
LOC109008784	LOC108996052	A0A2I4GKX3	A0A2I4F6R9	Tryptophan synthase alpha chain-like; Belongs to the TrpA family.	Tryptophan synthase alpha chain-like isoform X1; Belongs to the TrpA family.	0.900