(17 nodes) Mixed, incl. ABC-type maltose transporter activity, and MalK, OB fold domain network (Actinoplanes missouriensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMIS_16930	Putative ABC transporter substrate-binding protein. (437 aa)
	AMIS_16940	Putative ABC transporter permease protein. (325 aa)
	AMIS_16950	Putative ABC transporter permease protein. (285 aa)
	AMIS_16960	Putative ABC transporter substrate-binding protein. (478 aa)
	AMIS_16970	Putative ABC transporter permease protein. (295 aa)
	AMIS_16980	Putative ABC transporter permease protein. (296 aa)
	AMIS_23480	Putative ABC transporter permease protein. (267 aa)
	AMIS_23490	Putative ABC transporter permease protein. (292 aa)
	AMIS_23500	Putative ABC transporter substrate-binding protein. (465 aa)
	AMIS_32470	Putative ABC transporter permease protein. (268 aa)
	AMIS_32480	Putative ABC transporter permease protein. (319 aa)
	AMIS_32490	Putative ABC transporter substrate-binding protein. (429 aa)
	AMIS_3980	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (431 aa)
	AMIS_62480	Putative sugar ABC transporter permease protein. (279 aa)
	AMIS_62490	Putative sugar ABC transporter permease protein. (293 aa)
	AMIS_62500	Putative sugar ABC transporter substrate-binding protein. (420 aa)
	AMIS_77290	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (362 aa)

Your Current Organism:

Actinoplanes missouriensis

NCBI taxonomy Id: 512565
Other names: A. missouriensis 431, Actinoplanes missouriensis 431, Actinoplanes missouriensis str. 431, Actinoplanes missouriensis strain 431

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AMIS_16930	AMIS_16940	Putative ABC transporter substrate-binding protein.	Putative ABC transporter permease protein.	0.980
AMIS_16930	AMIS_16950	Putative ABC transporter substrate-binding protein.	Putative ABC transporter permease protein.	0.976
AMIS_16930	AMIS_16960	Putative ABC transporter substrate-binding protein.	Putative ABC transporter substrate-binding protein.	0.575
AMIS_16930	AMIS_16970	Putative ABC transporter substrate-binding protein.	Putative ABC transporter permease protein.	0.803
AMIS_16930	AMIS_16980	Putative ABC transporter substrate-binding protein.	Putative ABC transporter permease protein.	0.725
AMIS_16930	AMIS_23480	Putative ABC transporter substrate-binding protein.	Putative ABC transporter permease protein.	0.468
AMIS_16930	AMIS_23490	Putative ABC transporter substrate-binding protein.	Putative ABC transporter permease protein.	0.612
AMIS_16930	AMIS_32470	Putative ABC transporter substrate-binding protein.	Putative ABC transporter permease protein.	0.513
AMIS_16930	AMIS_32480	Putative ABC transporter substrate-binding protein.	Putative ABC transporter permease protein.	0.624
AMIS_16930	AMIS_3980	Putative ABC transporter substrate-binding protein.	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.912
AMIS_16930	AMIS_62480	Putative ABC transporter substrate-binding protein.	Putative sugar ABC transporter permease protein.	0.944
AMIS_16930	AMIS_62490	Putative ABC transporter substrate-binding protein.	Putative sugar ABC transporter permease protein.	0.932
AMIS_16930	AMIS_62500	Putative ABC transporter substrate-binding protein.	Putative sugar ABC transporter substrate-binding protein.	0.924
AMIS_16930	AMIS_77290	Putative ABC transporter substrate-binding protein.	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.912
AMIS_16940	AMIS_16930	Putative ABC transporter permease protein.	Putative ABC transporter substrate-binding protein.	0.980
AMIS_16940	AMIS_16950	Putative ABC transporter permease protein.	Putative ABC transporter permease protein.	0.993
AMIS_16940	AMIS_16960	Putative ABC transporter permease protein.	Putative ABC transporter substrate-binding protein.	0.810
AMIS_16940	AMIS_16970	Putative ABC transporter permease protein.	Putative ABC transporter permease protein.	0.975
AMIS_16940	AMIS_16980	Putative ABC transporter permease protein.	Putative ABC transporter permease protein.	0.947
AMIS_16940	AMIS_23480	Putative ABC transporter permease protein.	Putative ABC transporter permease protein.	0.853

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