6 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CH36_BRARP	Uncharacterized protein. (89 aa)
	M4E6L2_BRARP	Uncharacterized protein. (300 aa)
	M4EL00_BRARP	ERCC4 domain-containing protein. (627 aa)
	M4F023_BRARP	Uncharacterized protein. (1331 aa)
	M4FED2_BRARP	Uncharacterized protein. (398 aa)
	M4FG84_BRARP	PPIase cyclophilin-type domain-containing protein. (340 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CH36_BRARP	M4E6L2_BRARP	M4CH36	M4E6L2	Uncharacterized protein.	Uncharacterized protein.	0.990
M4CH36_BRARP	M4EL00_BRARP	M4CH36	M4EL00	Uncharacterized protein.	ERCC4 domain-containing protein.	0.933
M4CH36_BRARP	M4F023_BRARP	M4CH36	M4F023	Uncharacterized protein.	Uncharacterized protein.	0.969
M4CH36_BRARP	M4FED2_BRARP	M4CH36	M4FED2	Uncharacterized protein.	Uncharacterized protein.	0.986
M4CH36_BRARP	M4FG84_BRARP	M4CH36	M4FG84	Uncharacterized protein.	PPIase cyclophilin-type domain-containing protein.	0.980
M4E6L2_BRARP	M4CH36_BRARP	M4E6L2	M4CH36	Uncharacterized protein.	Uncharacterized protein.	0.990
M4E6L2_BRARP	M4EL00_BRARP	M4E6L2	M4EL00	Uncharacterized protein.	ERCC4 domain-containing protein.	0.981
M4E6L2_BRARP	M4F023_BRARP	M4E6L2	M4F023	Uncharacterized protein.	Uncharacterized protein.	0.994
M4E6L2_BRARP	M4FED2_BRARP	M4E6L2	M4FED2	Uncharacterized protein.	Uncharacterized protein.	0.998
M4E6L2_BRARP	M4FG84_BRARP	M4E6L2	M4FG84	Uncharacterized protein.	PPIase cyclophilin-type domain-containing protein.	0.988
M4EL00_BRARP	M4CH36_BRARP	M4EL00	M4CH36	ERCC4 domain-containing protein.	Uncharacterized protein.	0.933
M4EL00_BRARP	M4E6L2_BRARP	M4EL00	M4E6L2	ERCC4 domain-containing protein.	Uncharacterized protein.	0.981
M4EL00_BRARP	M4F023_BRARP	M4EL00	M4F023	ERCC4 domain-containing protein.	Uncharacterized protein.	0.986
M4EL00_BRARP	M4FED2_BRARP	M4EL00	M4FED2	ERCC4 domain-containing protein.	Uncharacterized protein.	0.993
M4EL00_BRARP	M4FG84_BRARP	M4EL00	M4FG84	ERCC4 domain-containing protein.	PPIase cyclophilin-type domain-containing protein.	0.982
M4F023_BRARP	M4CH36_BRARP	M4F023	M4CH36	Uncharacterized protein.	Uncharacterized protein.	0.969
M4F023_BRARP	M4E6L2_BRARP	M4F023	M4E6L2	Uncharacterized protein.	Uncharacterized protein.	0.994
M4F023_BRARP	M4EL00_BRARP	M4F023	M4EL00	Uncharacterized protein.	ERCC4 domain-containing protein.	0.986
M4F023_BRARP	M4FED2_BRARP	M4F023	M4FED2	Uncharacterized protein.	Uncharacterized protein.	0.996
M4F023_BRARP	M4FG84_BRARP	M4F023	M4FG84	Uncharacterized protein.	PPIase cyclophilin-type domain-containing protein.	0.925

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