(65 nodes) rRNA binding, and Mitochondrial large ribosomal subunit network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4C7V7_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (266 aa)
	M4C9S4_BRARP	Uncharacterized protein. (264 aa)
	M4C9W0_BRARP	Uncharacterized protein. (197 aa)
	M4CBZ0_BRARP	Uncharacterized protein. (134 aa)
	M4CDA4_BRARP	Uncharacterized protein. (58 aa)
	M4CFJ1_BRARP	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (199 aa)
	M4CFV2_BRARP	Uncharacterized protein. (220 aa)
	M4CHU3_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (145 aa)
	M4CKE8_BRARP	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (142 aa)
	M4CKI7_BRARP	Uncharacterized protein. (388 aa)
	M4CMI0_BRARP	Uncharacterized protein. (154 aa)
	M4CP94_BRARP	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (159 aa)
	M4CPH8_BRARP	Uncharacterized protein. (233 aa)
	M4CQ01_BRARP	Uncharacterized protein. (155 aa)
	M4CQQ5_BRARP	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (103 aa)
	M4CVX6_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (242 aa)
	M4CXJ2_BRARP	Uncharacterized protein. (223 aa)
	M4D0T8_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (272 aa)
	M4D186_BRARP	Uncharacterized protein. (215 aa)
	M4D1B8_BRARP	Uncharacterized protein. (258 aa)
	M4D429_BRARP	Uncharacterized protein. (258 aa)
	M4D471_BRARP	Uncharacterized protein. (212 aa)
	M4D4Y9_BRARP	Uncharacterized protein. (113 aa)
	M4D6K2_BRARP	Ribosomal_TL5_C domain-containing protein. (249 aa)
	M4DB56_BRARP	Ribosomal_TL5_C domain-containing protein. (268 aa)
	M4DEA9_BRARP	Uncharacterized protein. (113 aa)
	M4DFX4_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (223 aa)
	M4DGF0_BRARP	Uncharacterized protein. (283 aa)
	M4DH73_BRARP	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (147 aa)
	M4DHT7_BRARP	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (326 aa)
	M4DJA3_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (118 aa)
	M4DK33_BRARP	Uncharacterized protein. (91 aa)
	M4DMH9_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (156 aa)
	M4DMI0_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (156 aa)
	M4DU96_BRARP	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (104 aa)
	M4DXK8_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (311 aa)
	M4DZA6_BRARP	Uncharacterized protein. (142 aa)
	M4DZQ9_BRARP	Uncharacterized protein. (160 aa)
	M4E0C0_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (255 aa)
	M4E1H7_BRARP	Uncharacterized protein. (254 aa)
	M4E1T4_BRARP	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (201 aa)
	M4E3F1_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (219 aa)
	M4E3I8_BRARP	Uncharacterized protein. (229 aa)
	M4E409_BRARP	Uncharacterized protein. (156 aa)
	M4E5I2_BRARP	Uncharacterized protein. (267 aa)
	ARP1	Uncharacterized protein. (198 aa)
	M4EB69_BRARP	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (126 aa)
	M4EE03_BRARP	RF_PROK_I domain-containing protein. (233 aa)
	M4EJQ1_BRARP	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (128 aa)
	M4EKE0_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (289 aa)
	M4EQN6_BRARP	Uncharacterized protein. (514 aa)
	M4EUJ9_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (224 aa)
	M4F6Q3_BRARP	Uncharacterized protein. (203 aa)
	M4F7T3_BRARP	Ribosomal_TL5_C domain-containing protein. (200 aa)
	M4F946_BRARP	RIBOSOMAL_L9 domain-containing protein. (196 aa)
	M4F9M4_BRARP	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (160 aa)
	M4F9M5_BRARP	Ribosomal_L18e/L15P domain-containing protein. (278 aa)
	M4FH70_BRARP	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (339 aa)
	M4FHX3_BRARP	Uncharacterized protein. (193 aa)
	M4FIP6_BRARP	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
	M4FIP9_BRARP	RPOLD domain-containing protein. (475 aa)
	M4FIQ1_BRARP	Ribosomal_L16 domain-containing protein. (171 aa)
	M4FIQ3_BRARP	Ribosomal_L2_C domain-containing protein. (165 aa)
	M4FIV9_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS2 family. (206 aa)
	M4FJ65_BRARP	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family. (156 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARP1	M4C7V7_BRARP	M4E9S8	M4C7V7	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.972
ARP1	M4C9S4_BRARP	M4E9S8	M4C9S4	Uncharacterized protein.	Uncharacterized protein.	0.991
ARP1	M4C9W0_BRARP	M4E9S8	M4C9W0	Uncharacterized protein.	Uncharacterized protein.	0.965
ARP1	M4CBZ0_BRARP	M4E9S8	M4CBZ0	Uncharacterized protein.	Uncharacterized protein.	0.993
ARP1	M4CDA4_BRARP	M4E9S8	M4CDA4	Uncharacterized protein.	Uncharacterized protein.	0.997
ARP1	M4CFJ1_BRARP	M4E9S8	M4CFJ1	Uncharacterized protein.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.985
ARP1	M4CFV2_BRARP	M4E9S8	M4CFV2	Uncharacterized protein.	Uncharacterized protein.	0.989
ARP1	M4CHU3_BRARP	M4E9S8	M4CHU3	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.981
ARP1	M4CKE8_BRARP	M4E9S8	M4CKE8	Uncharacterized protein.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.993
ARP1	M4CKI7_BRARP	M4E9S8	M4CKI7	Uncharacterized protein.	Uncharacterized protein.	0.939
ARP1	M4CMI0_BRARP	M4E9S8	M4CMI0	Uncharacterized protein.	Uncharacterized protein.	0.978
ARP1	M4CP94_BRARP	M4E9S8	M4CP94	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.974
ARP1	M4CPH8_BRARP	M4E9S8	M4CPH8	Uncharacterized protein.	Uncharacterized protein.	0.969
ARP1	M4CQ01_BRARP	M4E9S8	M4CQ01	Uncharacterized protein.	Uncharacterized protein.	0.908
ARP1	M4CQQ5_BRARP	M4E9S8	M4CQQ5	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.992
ARP1	M4CVX6_BRARP	M4E9S8	M4CVX6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.965
ARP1	M4CXJ2_BRARP	M4E9S8	M4CXJ2	Uncharacterized protein.	Uncharacterized protein.	0.969
ARP1	M4D0T8_BRARP	M4E9S8	M4D0T8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.980
ARP1	M4D186_BRARP	M4E9S8	M4D186	Uncharacterized protein.	Uncharacterized protein.	0.992
ARP1	M4D1B8_BRARP	M4E9S8	M4D1B8	Uncharacterized protein.	Uncharacterized protein.	0.987

page 1 of 206

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About