(21 nodes) Mixed, incl. Ribosomal protein L16, and Plastid ribosome network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4C7V7_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (266 aa)
	M4C9S4_BRARP	Uncharacterized protein. (264 aa)
	M4CBZ0_BRARP	Uncharacterized protein. (134 aa)
	M4CFJ1_BRARP	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (199 aa)
	M4CHU3_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (145 aa)
	M4CMI0_BRARP	Uncharacterized protein. (154 aa)
	M4CVX6_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (242 aa)
	M4D4Y9_BRARP	Uncharacterized protein. (113 aa)
	M4DFX4_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (223 aa)
	M4DGF0_BRARP	Uncharacterized protein. (283 aa)
	M4DHT7_BRARP	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family. (326 aa)
	M4DZA6_BRARP	Uncharacterized protein. (142 aa)
	ARP1	Uncharacterized protein. (198 aa)
	M4EE03_BRARP	RF_PROK_I domain-containing protein. (233 aa)
	M4F6Q3_BRARP	Uncharacterized protein. (203 aa)
	M4F946_BRARP	RIBOSOMAL_L9 domain-containing protein. (196 aa)
	M4FIP9_BRARP	RPOLD domain-containing protein. (475 aa)
	M4FIQ1_BRARP	Ribosomal_L16 domain-containing protein. (171 aa)
	M4FIQ3_BRARP	Ribosomal_L2_C domain-containing protein. (165 aa)
	M4FIV9_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS2 family. (206 aa)
	M4FJ65_BRARP	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family. (156 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARP1	M4C7V7_BRARP	M4E9S8	M4C7V7	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.972
ARP1	M4C9S4_BRARP	M4E9S8	M4C9S4	Uncharacterized protein.	Uncharacterized protein.	0.991
ARP1	M4CBZ0_BRARP	M4E9S8	M4CBZ0	Uncharacterized protein.	Uncharacterized protein.	0.993
ARP1	M4CFJ1_BRARP	M4E9S8	M4CFJ1	Uncharacterized protein.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.985
ARP1	M4CHU3_BRARP	M4E9S8	M4CHU3	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.981
ARP1	M4CMI0_BRARP	M4E9S8	M4CMI0	Uncharacterized protein.	Uncharacterized protein.	0.978
ARP1	M4CVX6_BRARP	M4E9S8	M4CVX6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.965
ARP1	M4D4Y9_BRARP	M4E9S8	M4D4Y9	Uncharacterized protein.	Uncharacterized protein.	0.982
ARP1	M4DFX4_BRARP	M4E9S8	M4DFX4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.966
ARP1	M4DGF0_BRARP	M4E9S8	M4DGF0	Uncharacterized protein.	Uncharacterized protein.	0.978
ARP1	M4DHT7_BRARP	M4E9S8	M4DHT7	Uncharacterized protein.	Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.	0.977
ARP1	M4DZA6_BRARP	M4E9S8	M4DZA6	Uncharacterized protein.	Uncharacterized protein.	0.991
ARP1	M4EE03_BRARP	M4E9S8	M4EE03	Uncharacterized protein.	RF_PROK_I domain-containing protein.	0.992
ARP1	M4F6Q3_BRARP	M4E9S8	M4F6Q3	Uncharacterized protein.	Uncharacterized protein.	0.991
ARP1	M4F946_BRARP	M4E9S8	M4F946	Uncharacterized protein.	RIBOSOMAL_L9 domain-containing protein.	0.991
ARP1	M4FIP9_BRARP	M4E9S8	M4FIP9	Uncharacterized protein.	RPOLD domain-containing protein.	0.968
ARP1	M4FIQ1_BRARP	M4E9S8	M4FIQ1	Uncharacterized protein.	Ribosomal_L16 domain-containing protein.	0.966
ARP1	M4FIQ3_BRARP	M4E9S8	M4FIQ3	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.961
ARP1	M4FIV9_BRARP	M4E9S8	M4FIV9	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS2 family.	0.978
ARP1	M4FJ65_BRARP	M4E9S8	M4FJ65	Uncharacterized protein.	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family.	0.980

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