(15 nodes) Biotin metabolism, and Acyl transferase domain network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CD61_BRARP	Uncharacterized protein. (264 aa)
	M4CPB4_BRARP	FabA domain-containing protein. (224 aa)
	M4D3R7_BRARP	Uncharacterized protein. (109 aa)
	M4D9P2_BRARP	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (462 aa)
	M4DP88_BRARP	PKS_AT domain-containing protein. (384 aa)
	M4DYM3_BRARP	PKS_AT domain-containing protein. (367 aa)
	M4DZT2_BRARP	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (472 aa)
	M4EAB6_BRARP	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (520 aa)
	M4EE21_BRARP	Uncharacterized protein. (404 aa)
	M4EII2_BRARP	FabA domain-containing protein. (223 aa)
	M4EMK5_BRARP	3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (319 aa)
	M4EN84_BRARP	FabA domain-containing protein. (220 aa)
	M4ET26_BRARP	Uncharacterized protein. (275 aa)
	M4EVH5_BRARP	3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (320 aa)
	M4FBS3_BRARP	FabA domain-containing protein. (221 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CD61_BRARP	M4CPB4_BRARP	M4CD61	M4CPB4	Uncharacterized protein.	FabA domain-containing protein.	0.928
M4CD61_BRARP	M4D9P2_BRARP	M4CD61	M4D9P2	Uncharacterized protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.826
M4CD61_BRARP	M4DP88_BRARP	M4CD61	M4DP88	Uncharacterized protein.	PKS_AT domain-containing protein.	0.958
M4CD61_BRARP	M4DYM3_BRARP	M4CD61	M4DYM3	Uncharacterized protein.	PKS_AT domain-containing protein.	0.958
M4CD61_BRARP	M4DZT2_BRARP	M4CD61	M4DZT2	Uncharacterized protein.	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.804
M4CD61_BRARP	M4EAB6_BRARP	M4CD61	M4EAB6	Uncharacterized protein.	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.753
M4CD61_BRARP	M4EE21_BRARP	M4CD61	M4EE21	Uncharacterized protein.	Uncharacterized protein.	0.933
M4CD61_BRARP	M4EII2_BRARP	M4CD61	M4EII2	Uncharacterized protein.	FabA domain-containing protein.	0.928
M4CD61_BRARP	M4EMK5_BRARP	M4CD61	M4EMK5	Uncharacterized protein.	3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.933
M4CD61_BRARP	M4EN84_BRARP	M4CD61	M4EN84	Uncharacterized protein.	FabA domain-containing protein.	0.921
M4CD61_BRARP	M4ET26_BRARP	M4CD61	M4ET26	Uncharacterized protein.	Uncharacterized protein.	0.901
M4CD61_BRARP	M4EVH5_BRARP	M4CD61	M4EVH5	Uncharacterized protein.	3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.933
M4CD61_BRARP	M4FBS3_BRARP	M4CD61	M4FBS3	Uncharacterized protein.	FabA domain-containing protein.	0.921
M4CPB4_BRARP	M4CD61_BRARP	M4CPB4	M4CD61	FabA domain-containing protein.	Uncharacterized protein.	0.928
M4CPB4_BRARP	M4D3R7_BRARP	M4CPB4	M4D3R7	FabA domain-containing protein.	Uncharacterized protein.	0.925
M4CPB4_BRARP	M4D9P2_BRARP	M4CPB4	M4D9P2	FabA domain-containing protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.903
M4CPB4_BRARP	M4DP88_BRARP	M4CPB4	M4DP88	FabA domain-containing protein.	PKS_AT domain-containing protein.	0.892
M4CPB4_BRARP	M4DYM3_BRARP	M4CPB4	M4DYM3	FabA domain-containing protein.	PKS_AT domain-containing protein.	0.891
M4CPB4_BRARP	M4DZT2_BRARP	M4CPB4	M4DZT2	FabA domain-containing protein.	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.898
M4CPB4_BRARP	M4EAB6_BRARP	M4CPB4	M4EAB6	FabA domain-containing protein.	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.880

page 1 of 10

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About