(35 nodes) Carotenoid biosynthesis, and Isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway network (Brassica rapa)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	M4CCA2_BRARP	TRANSKETOLASE_1 domain-containing protein. (618 aa)
	M4CE37_BRARP	Uncharacterized protein. (694 aa)
	M4CEY7_BRARP	Uncharacterized protein. (530 aa)
	M4CFY9_BRARP	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (303 aa)
	M4CQA2_BRARP	Uncharacterized protein. (414 aa)
	M4CRJ7_BRARP	Uncharacterized protein. (532 aa)
	M4CUD1_BRARP	Uncharacterized protein. (575 aa)
	M4CWH2_BRARP	Uncharacterized protein. (425 aa)
	M4CXM0_BRARP	Transket_pyr domain-containing protein. (696 aa)
	M4D0X4_BRARP	Uncharacterized protein. (481 aa)
	M4D2P8_BRARP	Amino_oxidase domain-containing protein. (557 aa)
	M4D6D1_BRARP	GHMP_kinases_N domain-containing protein. (326 aa)
	M4D6L8_BRARP	Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. (668 aa)
	M4DA68_BRARP	Uncharacterized protein. (504 aa)
	M4DNS3_BRARP	Uncharacterized protein. (71 aa)
	M4DQ25_BRARP	VDE domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (457 aa)
	BCH	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (300 aa)
	M4DTQ6_BRARP	NnrU domain-containing protein. (356 aa)
	M4DWS4_BRARP	Uncharacterized protein. (567 aa)
	M4DYK4_BRARP	Uncharacterized protein. (59 aa)
	M4E4A0_BRARP	Uncharacterized protein. (416 aa)
	M4ECT1_BRARP	Uncharacterized protein. (275 aa)
	M4EFV9_BRARP	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. (233 aa)
	M4EG57_BRARP	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. (233 aa)
	M4EM05_BRARP	Uncharacterized protein. (493 aa)
	M4ERW2_BRARP	Amino_oxidase domain-containing protein. (589 aa)
	M4EUS8_BRARP	DUF4033 domain-containing protein. (266 aa)
	PDS	Amino_oxidase domain-containing protein. (563 aa)
	M4EXF8_BRARP	TRANSKETOLASE_1 domain-containing protein. (708 aa)
	M4F481_BRARP	Uncharacterized protein. (475 aa)
	M4F7R9_BRARP	Uncharacterized protein. (901 aa)
	M4F900_BRARP	Uncharacterized protein. (395 aa)
	M4FBH1_BRARP	Uncharacterized protein; Belongs to the cytochrome P450 family. (544 aa)
	M4FH33_BRARP	Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. (561 aa)
	M4FH71_BRARP	Uncharacterized protein. (547 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BCH	M4CCA2_BRARP	M4DRK2	M4CCA2	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	TRANSKETOLASE_1 domain-containing protein.	0.416
BCH	M4CFY9_BRARP	M4DRK2	M4CFY9	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.901
BCH	M4CQA2_BRARP	M4DRK2	M4CQA2	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.457
BCH	M4CWH2_BRARP	M4DRK2	M4CWH2	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.457
BCH	M4D2P8_BRARP	M4DRK2	M4D2P8	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Amino_oxidase domain-containing protein.	0.493
BCH	M4D6L8_BRARP	M4DRK2	M4D6L8	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin.	0.943
BCH	M4DQ25_BRARP	M4DRK2	M4DQ25	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	VDE domain-containing protein; Belongs to the calycin superfamily. Lipocalin family.	0.954
BCH	M4DTQ6_BRARP	M4DRK2	M4DTQ6	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	NnrU domain-containing protein.	0.456
BCH	M4E4A0_BRARP	M4DRK2	M4E4A0	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.457
BCH	M4EM05_BRARP	M4DRK2	M4EM05	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.977
BCH	M4ERW2_BRARP	M4DRK2	M4ERW2	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Amino_oxidase domain-containing protein.	0.503
BCH	M4EUS8_BRARP	M4DRK2	M4EUS8	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	DUF4033 domain-containing protein.	0.924
BCH	M4EXF8_BRARP	M4DRK2	M4EXF8	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	TRANSKETOLASE_1 domain-containing protein.	0.416
BCH	M4F7R9_BRARP	M4DRK2	M4F7R9	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein.	0.943
BCH	M4FBH1_BRARP	M4DRK2	M4FBH1	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.482
BCH	M4FH33_BRARP	M4DRK2	M4FH33	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.	0.554
BCH	PDS	M4DRK2	M4EVD7	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	Amino_oxidase domain-containing protein.	0.493
M4CCA2_BRARP	BCH	M4CCA2	M4DRK2	TRANSKETOLASE_1 domain-containing protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.416
M4CCA2_BRARP	M4CE37_BRARP	M4CCA2	M4CE37	TRANSKETOLASE_1 domain-containing protein.	Uncharacterized protein.	0.709
M4CCA2_BRARP	M4CFY9_BRARP	M4CCA2	M4CFY9	TRANSKETOLASE_1 domain-containing protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.416

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