(12 nodes) Mixed, incl. Dsl1/NZR complex, and Vesicle-trafficking protein Sec22 network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CCL3_BRARP	Uncharacterized protein. (202 aa)
	M4CMV9_BRARP	Uncharacterized protein. (753 aa)
	M4CSI6_BRARP	Uncharacterized protein. (238 aa)
	M4CZV6_BRARP	Uncharacterized protein. (2370 aa)
	M4DEW0_BRARP	Uncharacterized protein. (295 aa)
	M4DJX8_BRARP	Uncharacterized protein; Belongs to the synaptobrevin family. (218 aa)
	M4DNN2_BRARP	Uncharacterized protein. (788 aa)
	M4DPU9_BRARP	Homeobox domain-containing protein. (813 aa)
	M4DQ36_BRARP	Uncharacterized protein. (776 aa)
	M4E2C1_BRARP	Uncharacterized protein. (758 aa)
	M4EK11_BRARP	Longin domain-containing protein; Belongs to the synaptobrevin family. (195 aa)
	M4ESK9_BRARP	Uncharacterized protein; Belongs to the synaptobrevin family. (479 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CCL3_BRARP	M4CMV9_BRARP	M4CCL3	M4CMV9	Uncharacterized protein.	Uncharacterized protein.	0.976
M4CCL3_BRARP	M4CSI6_BRARP	M4CCL3	M4CSI6	Uncharacterized protein.	Uncharacterized protein.	0.995
M4CCL3_BRARP	M4CZV6_BRARP	M4CCL3	M4CZV6	Uncharacterized protein.	Uncharacterized protein.	0.986
M4CCL3_BRARP	M4DEW0_BRARP	M4CCL3	M4DEW0	Uncharacterized protein.	Uncharacterized protein.	0.545
M4CCL3_BRARP	M4DJX8_BRARP	M4CCL3	M4DJX8	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.951
M4CCL3_BRARP	M4DNN2_BRARP	M4CCL3	M4DNN2	Uncharacterized protein.	Uncharacterized protein.	0.985
M4CCL3_BRARP	M4DPU9_BRARP	M4CCL3	M4DPU9	Uncharacterized protein.	Homeobox domain-containing protein.	0.991
M4CCL3_BRARP	M4DQ36_BRARP	M4CCL3	M4DQ36	Uncharacterized protein.	Uncharacterized protein.	0.985
M4CCL3_BRARP	M4E2C1_BRARP	M4CCL3	M4E2C1	Uncharacterized protein.	Uncharacterized protein.	0.976
M4CCL3_BRARP	M4EK11_BRARP	M4CCL3	M4EK11	Uncharacterized protein.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.943
M4CCL3_BRARP	M4ESK9_BRARP	M4CCL3	M4ESK9	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.951
M4CMV9_BRARP	M4CCL3_BRARP	M4CMV9	M4CCL3	Uncharacterized protein.	Uncharacterized protein.	0.976
M4CMV9_BRARP	M4CSI6_BRARP	M4CMV9	M4CSI6	Uncharacterized protein.	Uncharacterized protein.	0.991
M4CMV9_BRARP	M4CZV6_BRARP	M4CMV9	M4CZV6	Uncharacterized protein.	Uncharacterized protein.	0.992
M4CMV9_BRARP	M4DEW0_BRARP	M4CMV9	M4DEW0	Uncharacterized protein.	Uncharacterized protein.	0.976
M4CMV9_BRARP	M4DJX8_BRARP	M4CMV9	M4DJX8	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.873
M4CMV9_BRARP	M4DNN2_BRARP	M4CMV9	M4DNN2	Uncharacterized protein.	Uncharacterized protein.	0.987
M4CMV9_BRARP	M4DPU9_BRARP	M4CMV9	M4DPU9	Uncharacterized protein.	Homeobox domain-containing protein.	0.992
M4CMV9_BRARP	M4DQ36_BRARP	M4CMV9	M4DQ36	Uncharacterized protein.	Uncharacterized protein.	0.988
M4CMV9_BRARP	M4E2C1_BRARP	M4CMV9	M4E2C1	Uncharacterized protein.	Uncharacterized protein.	0.543

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