11 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CE98_BRARP	WD_REPEATS_REGION domain-containing protein. (201 aa)
	M4D1N2_BRARP	Uncharacterized protein. (646 aa)
	M4D381_BRARP	Uncharacterized protein. (792 aa)
	M4DB43_BRARP	Uncharacterized protein. (460 aa)
	M4DJH9_BRARP	WD_REPEATS_REGION domain-containing protein. (882 aa)
	M4E3U4_BRARP	WD_REPEATS_REGION domain-containing protein. (466 aa)
	M4E479_BRARP	WD_REPEATS_REGION domain-containing protein. (868 aa)
	M4EHD8_BRARP	RRP7 domain-containing protein. (293 aa)
	M4ELB7_BRARP	BP28CT domain-containing protein. (2208 aa)
	M4FBU0_BRARP	Uncharacterized protein. (101 aa)
	M4FC74_BRARP	Uncharacterized protein. (1948 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CE98_BRARP	M4D1N2_BRARP	M4CE98	M4D1N2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
M4CE98_BRARP	M4D381_BRARP	M4CE98	M4D381	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
M4CE98_BRARP	M4DB43_BRARP	M4CE98	M4DB43	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
M4CE98_BRARP	M4DJH9_BRARP	M4CE98	M4DJH9	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
M4CE98_BRARP	M4E3U4_BRARP	M4CE98	M4E3U4	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
M4CE98_BRARP	M4E479_BRARP	M4CE98	M4E479	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
M4CE98_BRARP	M4EHD8_BRARP	M4CE98	M4EHD8	WD_REPEATS_REGION domain-containing protein.	RRP7 domain-containing protein.	0.996
M4CE98_BRARP	M4ELB7_BRARP	M4CE98	M4ELB7	WD_REPEATS_REGION domain-containing protein.	BP28CT domain-containing protein.	0.999
M4CE98_BRARP	M4FBU0_BRARP	M4CE98	M4FBU0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
M4CE98_BRARP	M4FC74_BRARP	M4CE98	M4FC74	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
M4D1N2_BRARP	M4CE98_BRARP	M4D1N2	M4CE98	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
M4D1N2_BRARP	M4D381_BRARP	M4D1N2	M4D381	Uncharacterized protein.	Uncharacterized protein.	0.998
M4D1N2_BRARP	M4DB43_BRARP	M4D1N2	M4DB43	Uncharacterized protein.	Uncharacterized protein.	0.998
M4D1N2_BRARP	M4DJH9_BRARP	M4D1N2	M4DJH9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
M4D1N2_BRARP	M4E3U4_BRARP	M4D1N2	M4E3U4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
M4D1N2_BRARP	M4E479_BRARP	M4D1N2	M4E479	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
M4D1N2_BRARP	M4EHD8_BRARP	M4D1N2	M4EHD8	Uncharacterized protein.	RRP7 domain-containing protein.	0.999
M4D1N2_BRARP	M4ELB7_BRARP	M4D1N2	M4ELB7	Uncharacterized protein.	BP28CT domain-containing protein.	0.998
M4D1N2_BRARP	M4FBU0_BRARP	M4D1N2	M4FBU0	Uncharacterized protein.	Uncharacterized protein.	0.999
M4D1N2_BRARP	M4FC74_BRARP	M4D1N2	M4FC74	Uncharacterized protein.	Uncharacterized protein.	0.988

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