5 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Your Input:
	M4DDC6_BRARP	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (228 aa)
	M4EIP1_BRARP	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (386 aa)
	M4EM29_BRARP	WD_REPEATS_REGION domain-containing protein. (503 aa)
	M4F9D2_BRARP	Sas10 domain-containing protein. (248 aa)
	M4FB61_BRARP	Uncharacterized protein. (904 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4DDC6_BRARP	M4EIP1_BRARP	M4DDC6	M4EIP1	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
M4DDC6_BRARP	M4EM29_BRARP	M4DDC6	M4EM29	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	WD_REPEATS_REGION domain-containing protein.	0.998
M4DDC6_BRARP	M4F9D2_BRARP	M4DDC6	M4F9D2	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Sas10 domain-containing protein.	0.998
M4DDC6_BRARP	M4FB61_BRARP	M4DDC6	M4FB61	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	Uncharacterized protein.	0.999
M4EIP1_BRARP	M4DDC6_BRARP	M4EIP1	M4DDC6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.999
M4EIP1_BRARP	M4EM29_BRARP	M4EIP1	M4EM29	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD_REPEATS_REGION domain-containing protein.	0.998
M4EIP1_BRARP	M4F9D2_BRARP	M4EIP1	M4F9D2	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Sas10 domain-containing protein.	0.998
M4EIP1_BRARP	M4FB61_BRARP	M4EIP1	M4FB61	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.999
M4EM29_BRARP	M4DDC6_BRARP	M4EM29	M4DDC6	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
M4EM29_BRARP	M4EIP1_BRARP	M4EM29	M4EIP1	WD_REPEATS_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
M4EM29_BRARP	M4F9D2_BRARP	M4EM29	M4F9D2	WD_REPEATS_REGION domain-containing protein.	Sas10 domain-containing protein.	0.998
M4EM29_BRARP	M4FB61_BRARP	M4EM29	M4FB61	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
M4F9D2_BRARP	M4DDC6_BRARP	M4F9D2	M4DDC6	Sas10 domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
M4F9D2_BRARP	M4EIP1_BRARP	M4F9D2	M4EIP1	Sas10 domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
M4F9D2_BRARP	M4EM29_BRARP	M4F9D2	M4EM29	Sas10 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
M4F9D2_BRARP	M4FB61_BRARP	M4F9D2	M4FB61	Sas10 domain-containing protein.	Uncharacterized protein.	0.999
M4FB61_BRARP	M4DDC6_BRARP	M4FB61	M4DDC6	Uncharacterized protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.999
M4FB61_BRARP	M4EIP1_BRARP	M4FB61	M4EIP1	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
M4FB61_BRARP	M4EM29_BRARP	M4FB61	M4EM29	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
M4FB61_BRARP	M4F9D2_BRARP	M4FB61	M4F9D2	Uncharacterized protein.	Sas10 domain-containing protein.	0.999

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