(15 nodes) Preribosome, small subunit precursor, and NUC173 domain network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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Others

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Your Input:
	M4CMJ6_BRARP	NUC173 domain-containing protein. (1266 aa)
	M4D8Q0_BRARP	RIO domain-containing protein. (319 aa)
	M4D8V2_BRARP	Uncharacterized protein. (482 aa)
	M4DEJ0_BRARP	Cu_amine_oxid domain-containing protein. (707 aa)
	M4DES3_BRARP	Uncharacterized protein. (148 aa)
	M4DQM2_BRARP	Uncharacterized protein. (769 aa)
	M4E9Q7_BRARP	Uncharacterized protein; Belongs to the NOB1 family. (573 aa)
	M4EI75_BRARP	Uncharacterized protein; Belongs to the NOB1 family. (576 aa)
	M4EMS6_BRARP	Uncharacterized protein. (244 aa)
	M4ETC1_BRARP	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (539 aa)
	M4F0V1_BRARP	KH domain-containing protein. (281 aa)
	M4F6W3_BRARP	RIO domain-containing protein. (452 aa)
	M4F7P2_BRARP	KH domain-containing protein. (233 aa)
	M4FCS1_BRARP	RIO domain-containing protein. (456 aa)
	M4FEY1_BRARP	Uncharacterized protein. (773 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CMJ6_BRARP	M4D8Q0_BRARP	M4CMJ6	M4D8Q0	NUC173 domain-containing protein.	RIO domain-containing protein.	0.951
M4CMJ6_BRARP	M4D8V2_BRARP	M4CMJ6	M4D8V2	NUC173 domain-containing protein.	Uncharacterized protein.	0.975
M4CMJ6_BRARP	M4DEJ0_BRARP	M4CMJ6	M4DEJ0	NUC173 domain-containing protein.	Cu_amine_oxid domain-containing protein.	0.976
M4CMJ6_BRARP	M4DES3_BRARP	M4CMJ6	M4DES3	NUC173 domain-containing protein.	Uncharacterized protein.	0.976
M4CMJ6_BRARP	M4DQM2_BRARP	M4CMJ6	M4DQM2	NUC173 domain-containing protein.	Uncharacterized protein.	0.992
M4CMJ6_BRARP	M4E9Q7_BRARP	M4CMJ6	M4E9Q7	NUC173 domain-containing protein.	Uncharacterized protein; Belongs to the NOB1 family.	0.933
M4CMJ6_BRARP	M4EI75_BRARP	M4CMJ6	M4EI75	NUC173 domain-containing protein.	Uncharacterized protein; Belongs to the NOB1 family.	0.933
M4CMJ6_BRARP	M4EMS6_BRARP	M4CMJ6	M4EMS6	NUC173 domain-containing protein.	Uncharacterized protein.	0.976
M4CMJ6_BRARP	M4ETC1_BRARP	M4CMJ6	M4ETC1	NUC173 domain-containing protein.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.664
M4CMJ6_BRARP	M4F0V1_BRARP	M4CMJ6	M4F0V1	NUC173 domain-containing protein.	KH domain-containing protein.	0.832
M4CMJ6_BRARP	M4F6W3_BRARP	M4CMJ6	M4F6W3	NUC173 domain-containing protein.	RIO domain-containing protein.	0.951
M4CMJ6_BRARP	M4F7P2_BRARP	M4CMJ6	M4F7P2	NUC173 domain-containing protein.	KH domain-containing protein.	0.832
M4CMJ6_BRARP	M4FCS1_BRARP	M4CMJ6	M4FCS1	NUC173 domain-containing protein.	RIO domain-containing protein.	0.951
M4CMJ6_BRARP	M4FEY1_BRARP	M4CMJ6	M4FEY1	NUC173 domain-containing protein.	Uncharacterized protein.	0.992
M4D8Q0_BRARP	M4CMJ6_BRARP	M4D8Q0	M4CMJ6	RIO domain-containing protein.	NUC173 domain-containing protein.	0.951
M4D8Q0_BRARP	M4D8V2_BRARP	M4D8Q0	M4D8V2	RIO domain-containing protein.	Uncharacterized protein.	0.999
M4D8Q0_BRARP	M4DEJ0_BRARP	M4D8Q0	M4DEJ0	RIO domain-containing protein.	Cu_amine_oxid domain-containing protein.	0.989
M4D8Q0_BRARP	M4DES3_BRARP	M4D8Q0	M4DES3	RIO domain-containing protein.	Uncharacterized protein.	0.989
M4D8Q0_BRARP	M4DQM2_BRARP	M4D8Q0	M4DQM2	RIO domain-containing protein.	Uncharacterized protein.	0.995
M4D8Q0_BRARP	M4E9Q7_BRARP	M4D8Q0	M4E9Q7	RIO domain-containing protein.	Uncharacterized protein; Belongs to the NOB1 family.	0.996

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