121 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

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Your Input:
	M4C756_BRARP	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (319 aa)
	M4C843_BRARP	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (738 aa)
	M4C9I4_BRARP	CP-type G domain-containing protein. (370 aa)
	M4CAK3_BRARP	CP-type G domain-containing protein. (584 aa)
	M4CBL5_BRARP	Brix domain-containing protein. (316 aa)
	M4CCE7_BRARP	Uncharacterized protein. (286 aa)
	M4CCG5_BRARP	Protein MAK16 homolog; Belongs to the MAK16 family. (297 aa)
	M4CDN3_BRARP	Uncharacterized protein. (517 aa)
	M4CE32_BRARP	Uncharacterized protein. (147 aa)
	M4CF85_BRARP	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (659 aa)
	M4CFX9_BRARP	WD_REPEATS_REGION domain-containing protein. (232 aa)
	M4CHA1_BRARP	Uncharacterized protein. (482 aa)
	M4CHD7_BRARP	Uncharacterized protein. (163 aa)
	M4CHK8_BRARP	DEAD-box ATP-dependent RNA helicase 29. (852 aa)
	M4CIB6_BRARP	Protein MAK16 homolog; Belongs to the MAK16 family. (305 aa)
	M4CIV6_BRARP	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (517 aa)
	M4CK33_BRARP	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (383 aa)
	M4CL06_BRARP	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. In the N-terminal section; belongs to the PMEI family. (1259 aa)
	M4CLZ5_BRARP	C2H2-type domain-containing protein. (118 aa)
	M4CNR1_BRARP	Uncharacterized protein. (344 aa)
	EIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (394 aa)
	M4CPX1_BRARP	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (592 aa)
	M4CQ17_BRARP	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (428 aa)
	M4CQD2_BRARP	Uncharacterized protein. (459 aa)
	M4CR10_BRARP	Thioredoxin domain-containing protein. (303 aa)
	M4CRN7_BRARP	Peptidase_M24 domain-containing protein. (796 aa)
	M4CRN9_BRARP	Uncharacterized protein. (108 aa)
	M4CSH9_BRARP	Uncharacterized protein. (628 aa)
	EIF6-2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	M4CSN5_BRARP	Uncharacterized protein. (206 aa)
	M4CT67_BRARP	Uncharacterized protein. (360 aa)
	M4CUN6_BRARP	Protein MAK16 homolog; Belongs to the MAK16 family. (302 aa)
	M4CWU4_BRARP	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (428 aa)
	M4CX51_BRARP	FtsJ domain-containing protein. (227 aa)
	M4CY17_BRARP	RNA helicase. (595 aa)
	M4CY91_BRARP	Uncharacterized protein. (260 aa)
	M4CYA4_BRARP	WD_REPEATS_REGION domain-containing protein. (480 aa)
	M4CYZ3_BRARP	RRM domain-containing protein. (223 aa)
	M4D1V1_BRARP	Uncharacterized protein. (765 aa)
	M4D2Y3_BRARP	WD_REPEATS_REGION domain-containing protein. (467 aa)
	M4D3C8_BRARP	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)
	M4D643_BRARP	Uncharacterized protein. (115 aa)
	M4D7N0_BRARP	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)
	M4D8F5_BRARP	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	M4D8M6_BRARP	Peptidase_M24 domain-containing protein. (390 aa)
	M4DDJ3_BRARP	Uncharacterized protein. (395 aa)
	EIF6-3	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (252 aa)
	M4DE19_BRARP	Uncharacterized protein. (377 aa)
	M4DEP5_BRARP	Brix domain-containing protein. (315 aa)
	M4DGT8_BRARP	WD_REPEATS_REGION domain-containing protein. (436 aa)
	M4DHT0_BRARP	CBF domain-containing protein. (1003 aa)
	M4DK19_BRARP	Uncharacterized protein. (93 aa)
	M4DKH4_BRARP	Uncharacterized protein. (380 aa)
	M4DKW3_BRARP	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (318 aa)
	M4DR60_BRARP	Nuclear/nucleolar GTPase 2; GTPase involved in pre-60S ribosomal subunit maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. (582 aa)
	M4DRK1_BRARP	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (818 aa)
	M4DSW8_BRARP	Brix domain-containing protein. (343 aa)
	M4DTN0_BRARP	Uncharacterized protein. (198 aa)
	M4DTV4_BRARP	NOGCT domain-containing protein. (338 aa)
	M4DTV5_BRARP	OBG-type G domain-containing protein. (261 aa)
	M4DTV6_BRARP	NOG1_N domain-containing protein. (94 aa)
	M4DX65_BRARP	Brix domain-containing protein. (321 aa)
	M4E020_BRARP	SAM_MT_RSMB_NOP domain-containing protein. (188 aa)
	M4E083_BRARP	PUM-HD domain-containing protein. (643 aa)
	M4E1G3_BRARP	WD_REPEATS_REGION domain-containing protein. (476 aa)
	M4E1I9_BRARP	Helicase ATP-binding domain-containing protein. (209 aa)
	M4E2T7_BRARP	C2H2-type domain-containing protein. (118 aa)
	M4E421_BRARP	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (428 aa)
	M4E4S7_BRARP	Protein MAK16 homolog; Belongs to the MAK16 family. (286 aa)
	M4E4V8_BRARP	Uncharacterized protein. (296 aa)
	M4E524_BRARP	Uncharacterized protein. (96 aa)
	M4E7L4_BRARP	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)
	M4E9W4_BRARP	TRASH domain-containing protein. (164 aa)
	M4ECA9_BRARP	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (641 aa)
	M4EDR1_BRARP	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (808 aa)
	M4EHR0_BRARP	Brix domain-containing protein. (316 aa)
	M4EI46_BRARP	TRASH domain-containing protein. (164 aa)
	M4EIW9_BRARP	Uncharacterized protein. (260 aa)
	M4EIZ2_BRARP	RNA helicase. (594 aa)
	M4EJ02_BRARP	Uncharacterized protein. (340 aa)
	M4EJ18_BRARP	RRM domain-containing protein. (219 aa)
	M4ELE9_BRARP	CP-type G domain-containing protein. (594 aa)
	M4ENN3_BRARP	Uncharacterized protein. (64 aa)
	M4EP65_BRARP	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (667 aa)
	M4EPD8_BRARP	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (555 aa)
	M4EPK3_BRARP	CP-type G domain-containing protein. (576 aa)
	M4EQW7_BRARP	Uncharacterized protein. (972 aa)
	M4ES47_BRARP	Uncharacterized protein. (174 aa)
	M4ETR1_BRARP	U1-type domain-containing protein. (365 aa)
	M4EU23_BRARP	WD_REPEATS_REGION domain-containing protein. (508 aa)
	M4EUE4_BRARP	Uncharacterized protein. (258 aa)
	M4EV52_BRARP	Uncharacterized protein. (82 aa)
	M4EX19_BRARP	Uncharacterized protein. (194 aa)
	M4EXH3_BRARP	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	M4EZT8_BRARP	CP-type G domain-containing protein. (530 aa)
	M4F0R7_BRARP	Uncharacterized protein. (598 aa)
	M4F130_BRARP	Uncharacterized protein. (447 aa)
	M4F1M2_BRARP	Uncharacterized protein. (369 aa)
	M4F1Z8_BRARP	Uncharacterized protein. (835 aa)
	M4F257_BRARP	Uncharacterized protein. (455 aa)
	M4F3E4_BRARP	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (640 aa)
	M4F3Q2_BRARP	Uncharacterized protein. (115 aa)
	M4F4B4_BRARP	Brix domain-containing protein. (339 aa)
	M4F527_BRARP	Uncharacterized protein. (315 aa)
	M4F5G9_BRARP	Brix domain-containing protein. (350 aa)
	M4F772_BRARP	Uncharacterized protein. (357 aa)
	M4F8T8_BRARP	Uncharacterized protein. (313 aa)
	M4F8W3_BRARP	Uncharacterized protein. (431 aa)
	M4FAA3_BRARP	Uncharacterized protein. (172 aa)
	M4FAF3_BRARP	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (187 aa)
	M4FBM6_BRARP	Uncharacterized protein. (908 aa)
	M4FD26_BRARP	U1-type domain-containing protein. (271 aa)
	M4FE22_BRARP	NOG1_N domain-containing protein. (241 aa)
	M4FE55_BRARP	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (523 aa)
	M4FEV6_BRARP	Uncharacterized protein. (761 aa)
	M4FFL5_BRARP	NLE domain-containing protein. (120 aa)
	M4FG09_BRARP	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (509 aa)
	M4FGX9_BRARP	CP-type G domain-containing protein. (615 aa)
	M4FHF6_BRARP	Uncharacterized protein. (76 aa)
	M4FIA1_BRARP	Uncharacterized protein. (294 aa)
	M4FIG6_BRARP	Peptidase_M24 domain-containing protein. (393 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF6	EIF6-2	M4CPR8	M4CSI8	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.901
EIF6	EIF6-3	M4CPR8	M4DE12	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.545
EIF6	M4C756_BRARP	M4CPR8	M4C756	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.818
EIF6	M4C843_BRARP	M4CPR8	M4C843	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.979
EIF6	M4C9I4_BRARP	M4CPR8	M4C9I4	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	CP-type G domain-containing protein.	0.912
EIF6	M4CAK3_BRARP	M4CPR8	M4CAK3	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	CP-type G domain-containing protein.	0.912
EIF6	M4CBL5_BRARP	M4CPR8	M4CBL5	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Brix domain-containing protein.	0.929
EIF6	M4CCE7_BRARP	M4CPR8	M4CCE7	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein.	0.961
EIF6	M4CCG5_BRARP	M4CPR8	M4CCG5	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.872
EIF6	M4CDN3_BRARP	M4CPR8	M4CDN3	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein.	0.972
EIF6	M4CE32_BRARP	M4CPR8	M4CE32	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein.	0.890
EIF6	M4CF85_BRARP	M4CPR8	M4CF85	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.803
EIF6	M4CFX9_BRARP	M4CPR8	M4CFX9	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	WD_REPEATS_REGION domain-containing protein.	0.769
EIF6	M4CHA1_BRARP	M4CPR8	M4CHA1	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein.	0.786
EIF6	M4CHD7_BRARP	M4CPR8	M4CHD7	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein.	0.931
EIF6	M4CHK8_BRARP	M4CPR8	M4CHK8	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	DEAD-box ATP-dependent RNA helicase 29.	0.892
EIF6	M4CIB6_BRARP	M4CPR8	M4CIB6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.872
EIF6	M4CIV6_BRARP	M4CPR8	M4CIV6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.955
EIF6	M4CK33_BRARP	M4CPR8	M4CK33	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.674
EIF6	M4CL06_BRARP	M4CPR8	M4CL06	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. In the N-terminal section; belongs to the PMEI family.	0.979

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