(10 nodes) MIT domain superfamily, and Snf7 network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4C8H5_BRARP	Uncharacterized protein; Belongs to the AAA ATPase family. (433 aa)
	M4CAZ2_BRARP	Uncharacterized protein. (234 aa)
	M4CI26_BRARP	Uncharacterized protein. (203 aa)
	M4CNN5_BRARP	Uncharacterized protein. (238 aa)
	M4CYX5_BRARP	Uncharacterized protein. (240 aa)
	M4D6A0_BRARP	Uncharacterized protein; Belongs to the AAA ATPase family. (433 aa)
	M4DHP5_BRARP	Uncharacterized protein. (203 aa)
	M4DQ49_BRARP	Uncharacterized protein; Belongs to the AAA ATPase family. (430 aa)
	M4EC97_BRARP	Uncharacterized protein. (419 aa)
	M4EY61_BRARP	Uncharacterized protein. (207 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C8H5_BRARP	M4CAZ2_BRARP	M4C8H5	M4CAZ2	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.980
M4C8H5_BRARP	M4CI26_BRARP	M4C8H5	M4CI26	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.991
M4C8H5_BRARP	M4CNN5_BRARP	M4C8H5	M4CNN5	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.976
M4C8H5_BRARP	M4CYX5_BRARP	M4C8H5	M4CYX5	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.976
M4C8H5_BRARP	M4D6A0_BRARP	M4C8H5	M4D6A0	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.900
M4C8H5_BRARP	M4DHP5_BRARP	M4C8H5	M4DHP5	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.991
M4C8H5_BRARP	M4DQ49_BRARP	M4C8H5	M4DQ49	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.900
M4C8H5_BRARP	M4EC97_BRARP	M4C8H5	M4EC97	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.998
M4C8H5_BRARP	M4EY61_BRARP	M4C8H5	M4EY61	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.809
M4CAZ2_BRARP	M4C8H5_BRARP	M4CAZ2	M4C8H5	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.980
M4CAZ2_BRARP	M4CI26_BRARP	M4CAZ2	M4CI26	Uncharacterized protein.	Uncharacterized protein.	0.870
M4CAZ2_BRARP	M4CNN5_BRARP	M4CAZ2	M4CNN5	Uncharacterized protein.	Uncharacterized protein.	0.901
M4CAZ2_BRARP	M4CYX5_BRARP	M4CAZ2	M4CYX5	Uncharacterized protein.	Uncharacterized protein.	0.901
M4CAZ2_BRARP	M4D6A0_BRARP	M4CAZ2	M4D6A0	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.980
M4CAZ2_BRARP	M4DHP5_BRARP	M4CAZ2	M4DHP5	Uncharacterized protein.	Uncharacterized protein.	0.870
M4CAZ2_BRARP	M4DQ49_BRARP	M4CAZ2	M4DQ49	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.976
M4CAZ2_BRARP	M4EC97_BRARP	M4CAZ2	M4EC97	Uncharacterized protein.	Uncharacterized protein.	0.988
M4CAZ2_BRARP	M4EY61_BRARP	M4CAZ2	M4EY61	Uncharacterized protein.	Uncharacterized protein.	0.868
M4CI26_BRARP	M4C8H5_BRARP	M4CI26	M4C8H5	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.991
M4CI26_BRARP	M4CAZ2_BRARP	M4CI26	M4CAZ2	Uncharacterized protein.	Uncharacterized protein.	0.870

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