(12 nodes) Mostly uncharacterized, incl. Rho GTPase-activating protein 1-5, and Positive regulation of defense response to oomycetes network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4D3I6_BRARP	Uncharacterized protein. (441 aa)
	M4D6K5_BRARP	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family. (727 aa)
	M4DA35_BRARP	Uncharacterized protein. (431 aa)
	M4DZ03_BRARP	Uncharacterized protein. (853 aa)
	M4E0W5_BRARP	Uncharacterized protein. (459 aa)
	M4E4C9_BRARP	Uncharacterized protein. (764 aa)
	M4EBV1_BRARP	Uncharacterized protein. (390 aa)
	M4EP81_BRARP	Uncharacterized protein. (774 aa)
	M4EZL0_BRARP	Uncharacterized protein. (852 aa)
	M4EZV9_BRARP	Rho-GAP domain-containing protein. (718 aa)
	M4FCB9_BRARP	LRRNT_2 domain-containing protein. (373 aa)
	M4FCN8_BRARP	Uncharacterized protein. (384 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4D3I6_BRARP	M4E4C9_BRARP	M4D3I6	M4E4C9	Uncharacterized protein.	Uncharacterized protein.	0.470
M4D3I6_BRARP	M4EZV9_BRARP	M4D3I6	M4EZV9	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.501
M4D3I6_BRARP	M4FCN8_BRARP	M4D3I6	M4FCN8	Uncharacterized protein.	Uncharacterized protein.	0.499
M4DA35_BRARP	M4E4C9_BRARP	M4DA35	M4E4C9	Uncharacterized protein.	Uncharacterized protein.	0.449
M4DA35_BRARP	M4EZV9_BRARP	M4DA35	M4EZV9	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.505
M4DA35_BRARP	M4FCN8_BRARP	M4DA35	M4FCN8	Uncharacterized protein.	Uncharacterized protein.	0.502
M4DZ03_BRARP	M4E4C9_BRARP	M4DZ03	M4E4C9	Uncharacterized protein.	Uncharacterized protein.	0.512
M4DZ03_BRARP	M4EZV9_BRARP	M4DZ03	M4EZV9	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.530
M4DZ03_BRARP	M4FCN8_BRARP	M4DZ03	M4FCN8	Uncharacterized protein.	Uncharacterized protein.	0.500
M4E0W5_BRARP	M4E4C9_BRARP	M4E0W5	M4E4C9	Uncharacterized protein.	Uncharacterized protein.	0.471
M4E0W5_BRARP	M4EZV9_BRARP	M4E0W5	M4EZV9	Uncharacterized protein.	Rho-GAP domain-containing protein.	0.513
M4E0W5_BRARP	M4FCN8_BRARP	M4E0W5	M4FCN8	Uncharacterized protein.	Uncharacterized protein.	0.502
M4E4C9_BRARP	M4D3I6_BRARP	M4E4C9	M4D3I6	Uncharacterized protein.	Uncharacterized protein.	0.470
M4E4C9_BRARP	M4DA35_BRARP	M4E4C9	M4DA35	Uncharacterized protein.	Uncharacterized protein.	0.449
M4E4C9_BRARP	M4DZ03_BRARP	M4E4C9	M4DZ03	Uncharacterized protein.	Uncharacterized protein.	0.512
M4E4C9_BRARP	M4E0W5_BRARP	M4E4C9	M4E0W5	Uncharacterized protein.	Uncharacterized protein.	0.471
M4E4C9_BRARP	M4EBV1_BRARP	M4E4C9	M4EBV1	Uncharacterized protein.	Uncharacterized protein.	0.453
M4E4C9_BRARP	M4EP81_BRARP	M4E4C9	M4EP81	Uncharacterized protein.	Uncharacterized protein.	0.505
M4E4C9_BRARP	M4EZL0_BRARP	M4E4C9	M4EZL0	Uncharacterized protein.	Uncharacterized protein.	0.488
M4E4C9_BRARP	M4FCB9_BRARP	M4E4C9	M4FCB9	Uncharacterized protein.	LRRNT_2 domain-containing protein.	0.471

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