(28 nodes) Mixed, incl. PSRP-3/Ycf65 superfamily, and Small ribosomal subunit rRNA binding network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CBK7_BRARP	Uncharacterized protein. (201 aa)
	M4CD32_BRARP	Uncharacterized protein. (110 aa)
	M4CIJ3_BRARP	Uncharacterized protein. (160 aa)
	M4CJD9_BRARP	Uncharacterized protein. (168 aa)
	M4CLP7_BRARP	Uncharacterized protein. (119 aa)
	M4CQD6_BRARP	Uncharacterized protein. (113 aa)
	M4CRR5_BRARP	Uncharacterized protein. (251 aa)
	M4CSF2_BRARP	Uncharacterized protein. (181 aa)
	M4CSU0_BRARP	Uncharacterized protein. (143 aa)
	M4CWT1_BRARP	Uncharacterized protein. (179 aa)
	M4CZX2_BRARP	Ribosom_S30AE_C domain-containing protein. (204 aa)
	M4D2Z9_BRARP	Uncharacterized protein. (161 aa)
	M4DCB8_BRARP	Uncharacterized protein. (171 aa)
	M4DDU4_BRARP	Uncharacterized protein. (137 aa)
	M4DYJ7_BRARP	Uncharacterized protein. (199 aa)
	M4E4E1_BRARP	Uncharacterized protein. (106 aa)
	M4E4X0_BRARP	Uncharacterized protein. (313 aa)
	M4EER1_BRARP	Uncharacterized protein. (205 aa)
	M4EFZ1_BRARP	Uncharacterized protein. (208 aa)
	M4ETJ1_BRARP	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (148 aa)
	M4EW01_BRARP	Uncharacterized protein. (184 aa)
	M4EXB4_BRARP	Uncharacterized protein. (255 aa)
	M4F402_BRARP	Uncharacterized protein. (188 aa)
	M4FB98_BRARP	Uncharacterized protein. (147 aa)
	M4FDC0_BRARP	Uncharacterized protein. (180 aa)
	M4FDQ6_BRARP	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (147 aa)
	M4FI44_BRARP	Uncharacterized protein. (165 aa)
	M4FII7_BRARP	Uncharacterized protein. (208 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CBK7_BRARP	M4CD32_BRARP	M4CBK7	M4CD32	Uncharacterized protein.	Uncharacterized protein.	0.582
M4CBK7_BRARP	M4CIJ3_BRARP	M4CBK7	M4CIJ3	Uncharacterized protein.	Uncharacterized protein.	0.557
M4CBK7_BRARP	M4CJD9_BRARP	M4CBK7	M4CJD9	Uncharacterized protein.	Uncharacterized protein.	0.557
M4CBK7_BRARP	M4CLP7_BRARP	M4CBK7	M4CLP7	Uncharacterized protein.	Uncharacterized protein.	0.754
M4CBK7_BRARP	M4CQD6_BRARP	M4CBK7	M4CQD6	Uncharacterized protein.	Uncharacterized protein.	0.582
M4CBK7_BRARP	M4CRR5_BRARP	M4CBK7	M4CRR5	Uncharacterized protein.	Uncharacterized protein.	0.590
M4CBK7_BRARP	M4CSF2_BRARP	M4CBK7	M4CSF2	Uncharacterized protein.	Uncharacterized protein.	0.653
M4CBK7_BRARP	M4CSU0_BRARP	M4CBK7	M4CSU0	Uncharacterized protein.	Uncharacterized protein.	0.646
M4CBK7_BRARP	M4CWT1_BRARP	M4CBK7	M4CWT1	Uncharacterized protein.	Uncharacterized protein.	0.724
M4CBK7_BRARP	M4CZX2_BRARP	M4CBK7	M4CZX2	Uncharacterized protein.	Ribosom_S30AE_C domain-containing protein.	0.616
M4CBK7_BRARP	M4D2Z9_BRARP	M4CBK7	M4D2Z9	Uncharacterized protein.	Uncharacterized protein.	0.628
M4CBK7_BRARP	M4DCB8_BRARP	M4CBK7	M4DCB8	Uncharacterized protein.	Uncharacterized protein.	0.653
M4CBK7_BRARP	M4DDU4_BRARP	M4CBK7	M4DDU4	Uncharacterized protein.	Uncharacterized protein.	0.646
M4CBK7_BRARP	M4DYJ7_BRARP	M4CBK7	M4DYJ7	Uncharacterized protein.	Uncharacterized protein.	0.901
M4CBK7_BRARP	M4E4E1_BRARP	M4CBK7	M4E4E1	Uncharacterized protein.	Uncharacterized protein.	0.582
M4CBK7_BRARP	M4EER1_BRARP	M4CBK7	M4EER1	Uncharacterized protein.	Uncharacterized protein.	0.901
M4CBK7_BRARP	M4EFZ1_BRARP	M4CBK7	M4EFZ1	Uncharacterized protein.	Uncharacterized protein.	0.663
M4CBK7_BRARP	M4ETJ1_BRARP	M4CBK7	M4ETJ1	Uncharacterized protein.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.727
M4CBK7_BRARP	M4EW01_BRARP	M4CBK7	M4EW01	Uncharacterized protein.	Uncharacterized protein.	0.654
M4CBK7_BRARP	M4EXB4_BRARP	M4CBK7	M4EXB4	Uncharacterized protein.	Uncharacterized protein.	0.590

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