STRINGSTRING
M4CB52_BRARP M4CB52_BRARP M4CCW3_BRARP M4CCW3_BRARP M4CG08_BRARP M4CG08_BRARP M4CJR1_BRARP M4CJR1_BRARP M4CPK4_BRARP M4CPK4_BRARP M4CPK5_BRARP M4CPK5_BRARP M4CXG2_BRARP M4CXG2_BRARP M4DAN5_BRARP M4DAN5_BRARP M4DD21_BRARP M4DD21_BRARP M4DEL6_BRARP M4DEL6_BRARP M4DIY4_BRARP M4DIY4_BRARP M4DP83_BRARP M4DP83_BRARP M4DPY3_BRARP M4DPY3_BRARP M4DWL0_BRARP M4DWL0_BRARP M4DWM5_BRARP M4DWM5_BRARP M4DYK5_BRARP M4DYK5_BRARP M4E1W9_BRARP M4E1W9_BRARP M4E5P0_BRARP M4E5P0_BRARP M4E677_BRARP M4E677_BRARP M4E6Q4_BRARP M4E6Q4_BRARP M4EAM1_BRARP M4EAM1_BRARP M4ELJ4_BRARP M4ELJ4_BRARP M4ELV9_BRARP M4ELV9_BRARP M4EPS6_BRARP M4EPS6_BRARP M4ESA5_BRARP M4ESA5_BRARP M4EZC9_BRARP M4EZC9_BRARP M4EZE4_BRARP M4EZE4_BRARP M4F151_BRARP M4F151_BRARP M4F188_BRARP M4F188_BRARP M4F806_BRARP M4F806_BRARP M4F8T4_BRARP M4F8T4_BRARP M4F9K7_BRARP M4F9K7_BRARP M4F9Z3_BRARP M4F9Z3_BRARP M4FCI3_BRARP M4FCI3_BRARP M4FET1_BRARP M4FET1_BRARP M4FFZ4_BRARP M4FFZ4_BRARP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
M4CB52_BRARPCPSF_A domain-containing protein. (1341 aa)
M4CCW3_BRARPSmall nuclear ribonucleoprotein G. (79 aa)
M4CG08_BRARPDUF3449 domain-containing protein. (241 aa)
M4CJR1_BRARPUncharacterized protein. (258 aa)
M4CPK4_BRARPRRM domain-containing protein. (124 aa)
M4CPK5_BRARPUncharacterized protein. (131 aa)
M4CXG2_BRARPRRM domain-containing protein. (124 aa)
M4DAN5_BRARPPSP domain-containing protein. (576 aa)
M4DD21_BRARPSmall nuclear ribonucleoprotein Sm D2. (105 aa)
M4DEL6_BRARPSplicing factor subunit; Belongs to the SF3B5 family. (87 aa)
M4DIY4_BRARPSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (97 aa)
M4DP83_BRARPUncharacterized protein. (228 aa)
M4DPY3_BRARPUncharacterized protein. (440 aa)
M4DWL0_BRARPPSP domain-containing protein. (576 aa)
M4DWM5_BRARPSmall nuclear ribonucleoprotein-associated protein. (251 aa)
M4DYK5_BRARPUncharacterized protein. (110 aa)
M4E1W9_BRARPUncharacterized protein. (135 aa)
M4E5P0_BRARPSm domain-containing protein. (90 aa)
M4E677_BRARPSF3b1 domain-containing protein. (1245 aa)
M4E6Q4_BRARPSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
M4EAM1_BRARPSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (130 aa)
M4ELJ4_BRARPSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (118 aa)
M4ELV9_BRARPUncharacterized protein. (887 aa)
M4EPS6_BRARPLRRcap domain-containing protein. (256 aa)
M4ESA5_BRARPLRRcap domain-containing protein. (306 aa)
M4EZC9_BRARPCPSF_A domain-containing protein. (1214 aa)
M4EZE4_BRARPU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (187 aa)
M4F151_BRARPCPSF_A domain-containing protein. (1452 aa)
M4F188_BRARPSmall nuclear ribonucleoprotein G. (79 aa)
M4F806_BRARPUncharacterized protein. (381 aa)
M4F8T4_BRARPUncharacterized protein. (99 aa)
M4F9K7_BRARPTOG domain-containing protein. (1268 aa)
M4F9Z3_BRARPRRM domain-containing protein. (164 aa)
M4FCI3_BRARPSm domain-containing protein. (91 aa)
M4FET1_BRARPUncharacterized protein. (364 aa)
M4FFZ4_BRARPSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (112 aa)
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
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