36 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CA45_BRARP	Uncharacterized protein. (130 aa)
	M4CJ95_BRARP	Uncharacterized protein. (625 aa)
	M4CJM6_BRARP	Uncharacterized protein. (127 aa)
	M4CKE6_BRARP	Uncharacterized protein. (566 aa)
	M4CKS9_BRARP	Uncharacterized protein. (341 aa)
	M4CMB8_BRARP	Uncharacterized protein. (374 aa)
	M4CMG0_BRARP	Uncharacterized protein. (849 aa)
	M4CND9_BRARP	Uncharacterized protein. (506 aa)
	M4CWI6_BRARP	Uncharacterized protein; Belongs to the glycosyltransferase 2 family. (1143 aa)
	M4D5Z2_BRARP	Uncharacterized protein; Belongs to the glycosyltransferase 2 family. (1097 aa)
	M4D7N3_BRARP	Uncharacterized protein. (613 aa)
	M4D933_BRARP	Uncharacterized protein. (206 aa)
	M4DDE9_BRARP	Uncharacterized protein. (538 aa)
	M4DDF0_BRARP	Uncharacterized protein. (376 aa)
	M4DDN6_BRARP	Dilute domain-containing protein. (583 aa)
	M4DET8_BRARP	PRONE domain-containing protein. (547 aa)
	M4DGZ4_BRARP	Uncharacterized protein. (581 aa)
	M4DPR7_BRARP	Uncharacterized protein. (109 aa)
	M4DW04_BRARP	Uncharacterized protein. (172 aa)
	M4DXY1_BRARP	Uncharacterized protein; Belongs to the glycosyltransferase 2 family. (1151 aa)
	M4DZH9_BRARP	Uncharacterized protein. (843 aa)
	M4E0M0_BRARP	CRM domain-containing protein. (152 aa)
	M4E485_BRARP	Uncharacterized protein; Belongs to the glycosyltransferase 2 family. (1140 aa)
	M4E7U8_BRARP	Uncharacterized protein. (630 aa)
	M4E8C3_BRARP	Uncharacterized protein. (144 aa)
	M4EAL7_BRARP	Uncharacterized protein. (565 aa)
	M4EAQ0_BRARP	Uncharacterized protein. (453 aa)
	M4EDE0_BRARP	Uncharacterized protein. (601 aa)
	M4ET82_BRARP	Uncharacterized protein. (179 aa)
	M4ET92_BRARP	Uncharacterized protein; Belongs to the glycosyltransferase 2 family. (1146 aa)
	M4EUJ6_BRARP	Uncharacterized protein. (719 aa)
	M4EXL7_BRARP	Uncharacterized protein; Belongs to the glycosyltransferase 2 family. (1110 aa)
	M4EZJ7_BRARP	Uncharacterized protein. (533 aa)
	M4F7N8_BRARP	Uncharacterized protein. (80 aa)
	M4FEQ3_BRARP	Uncharacterized protein. (72 aa)
	M4FI58_BRARP	Uncharacterized protein. (165 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CA45_BRARP	M4CJ95_BRARP	M4CA45	M4CJ95	Uncharacterized protein.	Uncharacterized protein.	0.468
M4CA45_BRARP	M4CJM6_BRARP	M4CA45	M4CJM6	Uncharacterized protein.	Uncharacterized protein.	0.516
M4CA45_BRARP	M4CMB8_BRARP	M4CA45	M4CMB8	Uncharacterized protein.	Uncharacterized protein.	0.443
M4CA45_BRARP	M4CND9_BRARP	M4CA45	M4CND9	Uncharacterized protein.	Uncharacterized protein.	0.452
M4CA45_BRARP	M4CWI6_BRARP	M4CA45	M4CWI6	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 2 family.	0.470
M4CA45_BRARP	M4D5Z2_BRARP	M4CA45	M4D5Z2	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 2 family.	0.446
M4CA45_BRARP	M4D7N3_BRARP	M4CA45	M4D7N3	Uncharacterized protein.	Uncharacterized protein.	0.430
M4CA45_BRARP	M4DGZ4_BRARP	M4CA45	M4DGZ4	Uncharacterized protein.	Uncharacterized protein.	0.497
M4CA45_BRARP	M4DPR7_BRARP	M4CA45	M4DPR7	Uncharacterized protein.	Uncharacterized protein.	0.492
M4CA45_BRARP	M4DW04_BRARP	M4CA45	M4DW04	Uncharacterized protein.	Uncharacterized protein.	0.430
M4CA45_BRARP	M4DXY1_BRARP	M4CA45	M4DXY1	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 2 family.	0.475
M4CA45_BRARP	M4E0M0_BRARP	M4CA45	M4E0M0	Uncharacterized protein.	CRM domain-containing protein.	0.501
M4CA45_BRARP	M4E485_BRARP	M4CA45	M4E485	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 2 family.	0.465
M4CA45_BRARP	M4E7U8_BRARP	M4CA45	M4E7U8	Uncharacterized protein.	Uncharacterized protein.	0.446
M4CA45_BRARP	M4EAL7_BRARP	M4CA45	M4EAL7	Uncharacterized protein.	Uncharacterized protein.	0.490
M4CA45_BRARP	M4EAQ0_BRARP	M4CA45	M4EAQ0	Uncharacterized protein.	Uncharacterized protein.	0.492
M4CA45_BRARP	M4EDE0_BRARP	M4CA45	M4EDE0	Uncharacterized protein.	Uncharacterized protein.	0.469
M4CA45_BRARP	M4ET92_BRARP	M4CA45	M4ET92	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 2 family.	0.472
M4CA45_BRARP	M4EXL7_BRARP	M4CA45	M4EXL7	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 2 family.	0.437
M4CA45_BRARP	M4EZJ7_BRARP	M4CA45	M4EZJ7	Uncharacterized protein.	Uncharacterized protein.	0.481

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