(12 nodes) Mostly uncharacterized, incl. Protein of unknown function DUF3527, and Epidermal patterning factor proteins network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CFA4_BRARP	Uncharacterized protein. (101 aa)
	M4CGF0_BRARP	Uncharacterized protein. (93 aa)
	M4CHA7_BRARP	Uncharacterized protein. (89 aa)
	M4CMR4_BRARP	Uncharacterized protein. (524 aa)
	M4CSY6_BRARP	Uncharacterized protein. (93 aa)
	M4DE15_BRARP	Uncharacterized protein. (91 aa)
	M4DRM3_BRARP	BHLH domain-containing protein. (207 aa)
	M4E0Y5_BRARP	Uncharacterized protein. (110 aa)
	M4EI88_BRARP	Uncharacterized protein. (100 aa)
	M4F9P2_BRARP	Uncharacterized protein. (295 aa)
	M4FAV0_BRARP	Uncharacterized protein. (100 aa)
	80A08_28	80A08_28. (120 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
80A08_28	M4CFA4_BRARP	Q4ABN9	M4CFA4	80A08_28.	Uncharacterized protein.	0.523
80A08_28	M4CGF0_BRARP	Q4ABN9	M4CGF0	80A08_28.	Uncharacterized protein.	0.478
80A08_28	M4CMR4_BRARP	Q4ABN9	M4CMR4	80A08_28.	Uncharacterized protein.	0.484
80A08_28	M4CSY6_BRARP	Q4ABN9	M4CSY6	80A08_28.	Uncharacterized protein.	0.466
80A08_28	M4DE15_BRARP	Q4ABN9	M4DE15	80A08_28.	Uncharacterized protein.	0.527
80A08_28	M4EI88_BRARP	Q4ABN9	M4EI88	80A08_28.	Uncharacterized protein.	0.529
80A08_28	M4F9P2_BRARP	Q4ABN9	M4F9P2	80A08_28.	Uncharacterized protein.	0.491
M4CFA4_BRARP	80A08_28	M4CFA4	Q4ABN9	Uncharacterized protein.	80A08_28.	0.523
M4CFA4_BRARP	M4CGF0_BRARP	M4CFA4	M4CGF0	Uncharacterized protein.	Uncharacterized protein.	0.534
M4CFA4_BRARP	M4CHA7_BRARP	M4CFA4	M4CHA7	Uncharacterized protein.	Uncharacterized protein.	0.509
M4CFA4_BRARP	M4CMR4_BRARP	M4CFA4	M4CMR4	Uncharacterized protein.	Uncharacterized protein.	0.451
M4CFA4_BRARP	M4CSY6_BRARP	M4CFA4	M4CSY6	Uncharacterized protein.	Uncharacterized protein.	0.533
M4CFA4_BRARP	M4DRM3_BRARP	M4CFA4	M4DRM3	Uncharacterized protein.	BHLH domain-containing protein.	0.449
M4CFA4_BRARP	M4E0Y5_BRARP	M4CFA4	M4E0Y5	Uncharacterized protein.	Uncharacterized protein.	0.470
M4CFA4_BRARP	M4F9P2_BRARP	M4CFA4	M4F9P2	Uncharacterized protein.	Uncharacterized protein.	0.511
M4CFA4_BRARP	M4FAV0_BRARP	M4CFA4	M4FAV0	Uncharacterized protein.	Uncharacterized protein.	0.475
M4CGF0_BRARP	80A08_28	M4CGF0	Q4ABN9	Uncharacterized protein.	80A08_28.	0.478
M4CGF0_BRARP	M4CFA4_BRARP	M4CGF0	M4CFA4	Uncharacterized protein.	Uncharacterized protein.	0.534
M4CGF0_BRARP	M4CHA7_BRARP	M4CGF0	M4CHA7	Uncharacterized protein.	Uncharacterized protein.	0.498
M4CGF0_BRARP	M4DE15_BRARP	M4CGF0	M4DE15	Uncharacterized protein.	Uncharacterized protein.	0.531

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