(17 nodes) Mixed, incl. Recycling endosome membrane, and BZW1/2, W2 domain network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CM91_BRARP	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (292 aa)
	M4DD81_BRARP	4HBT domain-containing protein. (178 aa)
	M4DG80_BRARP	Uncharacterized protein. (87 aa)
	M4DM33_BRARP	Uncharacterized protein. (70 aa)
	M4DZT3_BRARP	Uncharacterized protein. (70 aa)
	M4E140_BRARP	W2 domain-containing protein. (403 aa)
	M4E6C9_BRARP	Flotillin-like. (470 aa)
	M4E8B8_BRARP	Uncharacterized protein. (71 aa)
	M4EE82_BRARP	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (291 aa)
	M4EHD0_BRARP	Cytochrome b561 domain-containing protein. (230 aa)
	M4EHH6_BRARP	Sacchrp_dh_NADP domain-containing protein. (453 aa)
	M4EP15_BRARP	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (283 aa)
	M4ERL6_BRARP	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (293 aa)
	M4EUR7_BRARP	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (284 aa)
	M4EX73_BRARP	Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (246 aa)
	M4FEH5_BRARP	W2 domain-containing protein. (411 aa)
	M4FGV9_BRARP	Uncharacterized protein. (307 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4DM33_BRARP	M4E140_BRARP	M4DM33	M4E140	Uncharacterized protein.	W2 domain-containing protein.	0.473
M4DZT3_BRARP	M4E140_BRARP	M4DZT3	M4E140	Uncharacterized protein.	W2 domain-containing protein.	0.473
M4E140_BRARP	M4DM33_BRARP	M4E140	M4DM33	W2 domain-containing protein.	Uncharacterized protein.	0.473
M4E140_BRARP	M4DZT3_BRARP	M4E140	M4DZT3	W2 domain-containing protein.	Uncharacterized protein.	0.473
M4E140_BRARP	M4E6C9_BRARP	M4E140	M4E6C9	W2 domain-containing protein.	Flotillin-like.	0.456
M4E140_BRARP	M4E8B8_BRARP	M4E140	M4E8B8	W2 domain-containing protein.	Uncharacterized protein.	0.473
M4E140_BRARP	M4FGV9_BRARP	M4E140	M4FGV9	W2 domain-containing protein.	Uncharacterized protein.	0.422
M4E6C9_BRARP	M4E140_BRARP	M4E6C9	M4E140	Flotillin-like.	W2 domain-containing protein.	0.456
M4E8B8_BRARP	M4E140_BRARP	M4E8B8	M4E140	Uncharacterized protein.	W2 domain-containing protein.	0.473
M4FEH5_BRARP	M4FGV9_BRARP	M4FEH5	M4FGV9	W2 domain-containing protein.	Uncharacterized protein.	0.422
M4FGV9_BRARP	M4E140_BRARP	M4FGV9	M4E140	Uncharacterized protein.	W2 domain-containing protein.	0.422
M4FGV9_BRARP	M4FEH5_BRARP	M4FGV9	M4FEH5	Uncharacterized protein.	W2 domain-containing protein.	0.422

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