(11 nodes) Presenilin, signal peptide peptidase, family, and Beta-L-arabinofuranosidase, GH127 network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CAC0_BRARP	Uncharacterized protein. (118 aa)
	M4CDK3_BRARP	Uncharacterized protein. (203 aa)
	M4CKK6_BRARP	PA domain-containing protein. (541 aa)
	M4CPN2_BRARP	Uncharacterized protein. (857 aa)
	M4D4E5_BRARP	Uncharacterized protein. (365 aa)
	M4D4N3_BRARP	Uncharacterized protein. (372 aa)
	M4E3N1_BRARP	Uncharacterized protein. (863 aa)
	M4EPA6_BRARP	PA domain-containing protein. (541 aa)
	M4EYF6_BRARP	RING-type domain-containing protein. (107 aa)
	M4F7E8_BRARP	Uncharacterized protein. (369 aa)
	M4F9H4_BRARP	PA domain-containing protein. (403 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CAC0_BRARP	M4CDK3_BRARP	M4CAC0	M4CDK3	Uncharacterized protein.	Uncharacterized protein.	0.503
M4CAC0_BRARP	M4CKK6_BRARP	M4CAC0	M4CKK6	Uncharacterized protein.	PA domain-containing protein.	0.489
M4CAC0_BRARP	M4CPN2_BRARP	M4CAC0	M4CPN2	Uncharacterized protein.	Uncharacterized protein.	0.573
M4CAC0_BRARP	M4D4E5_BRARP	M4CAC0	M4D4E5	Uncharacterized protein.	Uncharacterized protein.	0.575
M4CAC0_BRARP	M4E3N1_BRARP	M4CAC0	M4E3N1	Uncharacterized protein.	Uncharacterized protein.	0.573
M4CAC0_BRARP	M4F9H4_BRARP	M4CAC0	M4F9H4	Uncharacterized protein.	PA domain-containing protein.	0.489
M4CDK3_BRARP	M4CAC0_BRARP	M4CDK3	M4CAC0	Uncharacterized protein.	Uncharacterized protein.	0.503
M4CDK3_BRARP	M4CPN2_BRARP	M4CDK3	M4CPN2	Uncharacterized protein.	Uncharacterized protein.	0.456
M4CDK3_BRARP	M4E3N1_BRARP	M4CDK3	M4E3N1	Uncharacterized protein.	Uncharacterized protein.	0.456
M4CKK6_BRARP	M4CAC0_BRARP	M4CKK6	M4CAC0	PA domain-containing protein.	Uncharacterized protein.	0.489
M4CKK6_BRARP	M4CPN2_BRARP	M4CKK6	M4CPN2	PA domain-containing protein.	Uncharacterized protein.	0.422
M4CKK6_BRARP	M4E3N1_BRARP	M4CKK6	M4E3N1	PA domain-containing protein.	Uncharacterized protein.	0.422
M4CPN2_BRARP	M4CAC0_BRARP	M4CPN2	M4CAC0	Uncharacterized protein.	Uncharacterized protein.	0.573
M4CPN2_BRARP	M4CDK3_BRARP	M4CPN2	M4CDK3	Uncharacterized protein.	Uncharacterized protein.	0.456
M4CPN2_BRARP	M4CKK6_BRARP	M4CPN2	M4CKK6	Uncharacterized protein.	PA domain-containing protein.	0.422
M4CPN2_BRARP	M4D4E5_BRARP	M4CPN2	M4D4E5	Uncharacterized protein.	Uncharacterized protein.	0.507
M4CPN2_BRARP	M4F9H4_BRARP	M4CPN2	M4F9H4	Uncharacterized protein.	PA domain-containing protein.	0.422
M4D4E5_BRARP	M4CAC0_BRARP	M4D4E5	M4CAC0	Uncharacterized protein.	Uncharacterized protein.	0.575
M4D4E5_BRARP	M4CPN2_BRARP	M4D4E5	M4CPN2	Uncharacterized protein.	Uncharacterized protein.	0.507
M4D4E5_BRARP	M4E3N1_BRARP	M4D4E5	M4E3N1	Uncharacterized protein.	Uncharacterized protein.	0.507

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