(15 nodes) Mixed, incl. Endomembrane protein 70, and Lipid droplet formation network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CPE1_BRARP	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (656 aa)
	M4CPE2_BRARP	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (605 aa)
	M4CWL7_BRARP	Uncharacterized protein. (232 aa)
	M4CXQ8_BRARP	Uncharacterized protein. (1178 aa)
	M4D7J8_BRARP	X8 domain-containing protein. (196 aa)
	M4D9G5_BRARP	PMR5N domain-containing protein. (411 aa)
	M4DJK9_BRARP	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (589 aa)
	M4DJL1_BRARP	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (589 aa)
	M4DJS3_BRARP	Uncharacterized protein. (110 aa)
	M4DPI3_BRARP	Uncharacterized protein. (464 aa)
	M4DTF0_BRARP	Uncharacterized protein. (231 aa)
	M4EIE8_BRARP	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (634 aa)
	M4EU52_BRARP	Uncharacterized protein. (192 aa)
	M4EXJ1_BRARP	Uncharacterized protein. (659 aa)
	M4EYW0_BRARP	Uncharacterized protein. (236 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CPE1_BRARP	M4D7J8_BRARP	M4CPE1	M4D7J8	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	X8 domain-containing protein.	0.443
M4CPE1_BRARP	M4D9G5_BRARP	M4CPE1	M4D9G5	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	PMR5N domain-containing protein.	0.487
M4CPE1_BRARP	M4EXJ1_BRARP	M4CPE1	M4EXJ1	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Uncharacterized protein.	0.416
M4CPE2_BRARP	M4D7J8_BRARP	M4CPE2	M4D7J8	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	X8 domain-containing protein.	0.443
M4CPE2_BRARP	M4D9G5_BRARP	M4CPE2	M4D9G5	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	PMR5N domain-containing protein.	0.487
M4CPE2_BRARP	M4EXJ1_BRARP	M4CPE2	M4EXJ1	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Uncharacterized protein.	0.416
M4CWL7_BRARP	M4DPI3_BRARP	M4CWL7	M4DPI3	Uncharacterized protein.	Uncharacterized protein.	0.416
M4CWL7_BRARP	M4EU52_BRARP	M4CWL7	M4EU52	Uncharacterized protein.	Uncharacterized protein.	0.533
M4CWL7_BRARP	M4EYW0_BRARP	M4CWL7	M4EYW0	Uncharacterized protein.	Uncharacterized protein.	0.495
M4CXQ8_BRARP	M4D7J8_BRARP	M4CXQ8	M4D7J8	Uncharacterized protein.	X8 domain-containing protein.	0.443
M4CXQ8_BRARP	M4D9G5_BRARP	M4CXQ8	M4D9G5	Uncharacterized protein.	PMR5N domain-containing protein.	0.487
M4CXQ8_BRARP	M4EXJ1_BRARP	M4CXQ8	M4EXJ1	Uncharacterized protein.	Uncharacterized protein.	0.416
M4D7J8_BRARP	M4CPE1_BRARP	M4D7J8	M4CPE1	X8 domain-containing protein.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.443
M4D7J8_BRARP	M4CPE2_BRARP	M4D7J8	M4CPE2	X8 domain-containing protein.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.443
M4D7J8_BRARP	M4CXQ8_BRARP	M4D7J8	M4CXQ8	X8 domain-containing protein.	Uncharacterized protein.	0.443
M4D7J8_BRARP	M4D9G5_BRARP	M4D7J8	M4D9G5	X8 domain-containing protein.	PMR5N domain-containing protein.	0.592
M4D7J8_BRARP	M4EIE8_BRARP	M4D7J8	M4EIE8	X8 domain-containing protein.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.443
M4D7J8_BRARP	M4EXJ1_BRARP	M4D7J8	M4EXJ1	X8 domain-containing protein.	Uncharacterized protein.	0.570
M4D9G5_BRARP	M4CPE1_BRARP	M4D9G5	M4CPE1	PMR5N domain-containing protein.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.487
M4D9G5_BRARP	M4CPE2_BRARP	M4D9G5	M4CPE2	PMR5N domain-containing protein.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.487

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