(13 nodes) Outer mitochondrial membrane protein complex network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CB10_BRARP	Uncharacterized protein. (510 aa)
	M4CCS7_BRARP	Bac_surface_Ag domain-containing protein. (1136 aa)
	M4CY21_BRARP	Uncharacterized protein. (527 aa)
	M4DFL3_BRARP	Uncharacterized protein. (96 aa)
	M4DQQ3_BRARP	Uncharacterized protein. (320 aa)
	M4EFF6_BRARP	Uncharacterized protein. (99 aa)
	M4EY18_BRARP	Uncharacterized protein. (97 aa)
	M4F1C2_BRARP	Uncharacterized protein. (502 aa)
	M4F1P6_BRARP	Bac_surface_Ag domain-containing protein. (364 aa)
	M4F426_BRARP	Uncharacterized protein. (309 aa)
	M4FAY3_BRARP	Uncharacterized protein. (310 aa)
	M4FBU6_BRARP	Metaxin; Involved in transport of proteins into the mitochondrion. Belongs to the metaxin family. (314 aa)
	M4FCL9_BRARP	Thioredoxin-like_fold domain-containing protein. (231 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CB10_BRARP	M4CCS7_BRARP	M4CB10	M4CCS7	Uncharacterized protein.	Bac_surface_Ag domain-containing protein.	0.540
M4CB10_BRARP	M4CY21_BRARP	M4CB10	M4CY21	Uncharacterized protein.	Uncharacterized protein.	0.545
M4CB10_BRARP	M4DFL3_BRARP	M4CB10	M4DFL3	Uncharacterized protein.	Uncharacterized protein.	0.871
M4CB10_BRARP	M4DQQ3_BRARP	M4CB10	M4DQQ3	Uncharacterized protein.	Uncharacterized protein.	0.970
M4CB10_BRARP	M4EFF6_BRARP	M4CB10	M4EFF6	Uncharacterized protein.	Uncharacterized protein.	0.871
M4CB10_BRARP	M4EY18_BRARP	M4CB10	M4EY18	Uncharacterized protein.	Uncharacterized protein.	0.871
M4CB10_BRARP	M4F1C2_BRARP	M4CB10	M4F1C2	Uncharacterized protein.	Uncharacterized protein.	0.544
M4CB10_BRARP	M4F1P6_BRARP	M4CB10	M4F1P6	Uncharacterized protein.	Bac_surface_Ag domain-containing protein.	0.540
M4CB10_BRARP	M4F426_BRARP	M4CB10	M4F426	Uncharacterized protein.	Uncharacterized protein.	0.970
M4CB10_BRARP	M4FAY3_BRARP	M4CB10	M4FAY3	Uncharacterized protein.	Uncharacterized protein.	0.970
M4CB10_BRARP	M4FBU6_BRARP	M4CB10	M4FBU6	Uncharacterized protein.	Metaxin; Involved in transport of proteins into the mitochondrion. Belongs to the metaxin family.	0.988
M4CB10_BRARP	M4FCL9_BRARP	M4CB10	M4FCL9	Uncharacterized protein.	Thioredoxin-like_fold domain-containing protein.	0.982
M4CCS7_BRARP	M4CB10_BRARP	M4CCS7	M4CB10	Bac_surface_Ag domain-containing protein.	Uncharacterized protein.	0.540
M4CCS7_BRARP	M4CY21_BRARP	M4CCS7	M4CY21	Bac_surface_Ag domain-containing protein.	Uncharacterized protein.	0.540
M4CCS7_BRARP	M4DFL3_BRARP	M4CCS7	M4DFL3	Bac_surface_Ag domain-containing protein.	Uncharacterized protein.	0.759
M4CCS7_BRARP	M4DQQ3_BRARP	M4CCS7	M4DQQ3	Bac_surface_Ag domain-containing protein.	Uncharacterized protein.	0.924
M4CCS7_BRARP	M4EFF6_BRARP	M4CCS7	M4EFF6	Bac_surface_Ag domain-containing protein.	Uncharacterized protein.	0.759
M4CCS7_BRARP	M4EY18_BRARP	M4CCS7	M4EY18	Bac_surface_Ag domain-containing protein.	Uncharacterized protein.	0.759
M4CCS7_BRARP	M4F1C2_BRARP	M4CCS7	M4F1C2	Bac_surface_Ag domain-containing protein.	Uncharacterized protein.	0.540
M4CCS7_BRARP	M4F1P6_BRARP	M4CCS7	M4F1P6	Bac_surface_Ag domain-containing protein.	Bac_surface_Ag domain-containing protein.	0.543

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