40 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4DEY9_BRARP	Peptidase_S26 domain-containing protein. (293 aa)
	M4D4N3_BRARP	Uncharacterized protein. (372 aa)
	M4D3D2_BRARP	Rhomboid domain-containing protein. (334 aa)
	M4D0G0_BRARP	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family. (167 aa)
	M4CYX1_BRARP	Peptidase_S24 domain-containing protein. (163 aa)
	M4CXP5_BRARP	Peptidase_S24 domain-containing protein. (166 aa)
	M4CPE9_BRARP	Peptidase_S24 domain-containing protein. (145 aa)
	M4CLB1_BRARP	Uncharacterized protein. (198 aa)
	M4CAB2_BRARP	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family. (167 aa)
	M4ECQ7_BRARP	Uncharacterized protein. (343 aa)
	M4E9Y9_BRARP	EXS domain-containing protein. (230 aa)
	M4E7N2_BRARP	Uncharacterized protein. (335 aa)
	M4E229_BRARP	Uncharacterized protein. (206 aa)
	M4E1Z9_BRARP	Peptidase_S26 domain-containing protein. (156 aa)
	M4DYV9_BRARP	Uncharacterized protein. (165 aa)
	M4DYV7_BRARP	Uncharacterized protein. (80 aa)
	M4DYN8_BRARP	Peptidase_S26 domain-containing protein. (410 aa)
	M4DX85_BRARP	Signal peptidase I. (180 aa)
	M4DVP6_BRARP	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family. (167 aa)
	M4DR33_BRARP	Signal peptidase I. (180 aa)
	M4DLM1_BRARP	Uncharacterized protein. (157 aa)
	M4DKL2_BRARP	Uncharacterized protein. (217 aa)
	M4DHG9_BRARP	Uncharacterized protein. (669 aa)
	M4DGB1_BRARP	Peptidase_S26 domain-containing protein. (362 aa)
	M4DG60_BRARP	Uncharacterized protein. (195 aa)
	M4D5Q5_BRARP	Uncharacterized protein. (91 aa)
	M4EPC0_BRARP	Peptidase_S24 domain-containing protein. (205 aa)
	M4ENK2_BRARP	Signal peptidase I. (180 aa)
	M4ELR8_BRARP	Yippee domain-containing protein. (280 aa)
	M4EHZ5_BRARP	Rhomboid domain-containing protein. (435 aa)
	M4EHC3_BRARP	Rhomboid domain-containing protein. (418 aa)
	M4ERW5_BRARP	Peptidase_S26 domain-containing protein. (356 aa)
	M4EZ02_BRARP	Uncharacterized protein. (154 aa)
	M4F040_BRARP	Uncharacterized protein. (109 aa)
	M4F5P1_BRARP	Uncharacterized protein. (146 aa)
	M4F7E8_BRARP	Uncharacterized protein. (369 aa)
	M4FBQ9_BRARP	Uncharacterized protein. (89 aa)
	M4FED0_BRARP	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family. (167 aa)
	M4FIM9_BRARP	Signal peptidase I. (153 aa)
	M4EEK2_BRARP	Signal peptidase I. (180 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CAB2_BRARP	M4CLB1_BRARP	M4CAB2	M4CLB1	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Uncharacterized protein.	0.589
M4CAB2_BRARP	M4CPE9_BRARP	M4CAB2	M4CPE9	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Peptidase_S24 domain-containing protein.	0.593
M4CAB2_BRARP	M4CXP5_BRARP	M4CAB2	M4CXP5	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Peptidase_S24 domain-containing protein.	0.593
M4CAB2_BRARP	M4CYX1_BRARP	M4CAB2	M4CYX1	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Peptidase_S24 domain-containing protein.	0.593
M4CAB2_BRARP	M4D0G0_BRARP	M4CAB2	M4D0G0	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	0.594
M4CAB2_BRARP	M4D5Q5_BRARP	M4CAB2	M4D5Q5	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Uncharacterized protein.	0.977
M4CAB2_BRARP	M4DEY9_BRARP	M4CAB2	M4DEY9	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Peptidase_S26 domain-containing protein.	0.593
M4CAB2_BRARP	M4DG60_BRARP	M4CAB2	M4DG60	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Uncharacterized protein.	0.593
M4CAB2_BRARP	M4DGB1_BRARP	M4CAB2	M4DGB1	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Peptidase_S26 domain-containing protein.	0.593
M4CAB2_BRARP	M4DKL2_BRARP	M4CAB2	M4DKL2	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Uncharacterized protein.	0.589
M4CAB2_BRARP	M4DR33_BRARP	M4CAB2	M4DR33	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Signal peptidase I.	0.937
M4CAB2_BRARP	M4DVP6_BRARP	M4CAB2	M4DVP6	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	0.594
M4CAB2_BRARP	M4DX85_BRARP	M4CAB2	M4DX85	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Signal peptidase I.	0.936
M4CAB2_BRARP	M4DYN8_BRARP	M4CAB2	M4DYN8	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Peptidase_S26 domain-containing protein.	0.593
M4CAB2_BRARP	M4DYV7_BRARP	M4CAB2	M4DYV7	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Uncharacterized protein.	0.593
M4CAB2_BRARP	M4DYV9_BRARP	M4CAB2	M4DYV9	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Uncharacterized protein.	0.593
M4CAB2_BRARP	M4E1Z9_BRARP	M4CAB2	M4E1Z9	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Peptidase_S26 domain-containing protein.	0.593
M4CAB2_BRARP	M4E229_BRARP	M4CAB2	M4E229	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Uncharacterized protein.	0.593
M4CAB2_BRARP	M4EEK2_BRARP	M4CAB2	M4EEK2	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Signal peptidase I.	0.936
M4CAB2_BRARP	M4ELR8_BRARP	M4CAB2	M4ELR8	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	Yippee domain-containing protein.	0.593

page 1 of 22

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About