(21 nodes) Malate transmembrane transporter activity network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4FDW7_BRARP	WHy domain-containing protein. (166 aa)
	M4C886_BRARP	WHy domain-containing protein. (166 aa)
	M4CK31_BRARP	WHy domain-containing protein. (166 aa)
	M4CP84_BRARP	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (335 aa)
	M4CXC9_BRARP	Uncharacterized protein. (297 aa)
	M4DBF5_BRARP	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (315 aa)
	M4DLU6_BRARP	Uncharacterized protein. (465 aa)
	M4DQ34_BRARP	Uncharacterized protein. (508 aa)
	M4E045_BRARP	Uncharacterized protein. (535 aa)
	M4E678_BRARP	Uncharacterized protein. (555 aa)
	M4E828_BRARP	Uncharacterized protein. (543 aa)
	M4EN61_BRARP	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (317 aa)
	M4ENX4_BRARP	WHy domain-containing protein. (151 aa)
	M4EPK5_BRARP	Uncharacterized protein. (492 aa)
	M4EPK6_BRARP	Uncharacterized protein. (498 aa)
	M4ESZ6_BRARP	Uncharacterized protein. (556 aa)
	M4EZU6_BRARP	Uncharacterized protein. (492 aa)
	M4F173_BRARP	Uncharacterized protein. (490 aa)
	M4F9K8_BRARP	Uncharacterized protein. (563 aa)
	M4FBQ1_BRARP	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (315 aa)
	M4FC56_BRARP	Uncharacterized protein. (490 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CXC9_BRARP	M4E678_BRARP	M4CXC9	M4E678	Uncharacterized protein.	Uncharacterized protein.	0.456
M4CXC9_BRARP	M4EN61_BRARP	M4CXC9	M4EN61	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.455
M4CXC9_BRARP	M4ESZ6_BRARP	M4CXC9	M4ESZ6	Uncharacterized protein.	Uncharacterized protein.	0.458
M4CXC9_BRARP	M4F9K8_BRARP	M4CXC9	M4F9K8	Uncharacterized protein.	Uncharacterized protein.	0.456
M4CXC9_BRARP	M4FBQ1_BRARP	M4CXC9	M4FBQ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.455
M4E678_BRARP	M4CXC9_BRARP	M4E678	M4CXC9	Uncharacterized protein.	Uncharacterized protein.	0.456
M4EN61_BRARP	M4CXC9_BRARP	M4EN61	M4CXC9	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.455
M4ESZ6_BRARP	M4CXC9_BRARP	M4ESZ6	M4CXC9	Uncharacterized protein.	Uncharacterized protein.	0.458
M4F9K8_BRARP	M4CXC9_BRARP	M4F9K8	M4CXC9	Uncharacterized protein.	Uncharacterized protein.	0.456
M4FBQ1_BRARP	M4CXC9_BRARP	M4FBQ1	M4CXC9	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.455

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