(11 nodes) Carotene biosynthetic process network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4DTQ6_BRARP	NnrU domain-containing protein. (356 aa)
	M4CA56_BRARP	S1 motif domain-containing protein. (921 aa)
	M4CEY7_BRARP	Uncharacterized protein. (530 aa)
	M4CRJ7_BRARP	Uncharacterized protein. (532 aa)
	M4FH33_BRARP	Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. (561 aa)
	M4F900_BRARP	Uncharacterized protein. (395 aa)
	M4ET48_BRARP	S1 motif domain-containing protein. (866 aa)
	M4EM05_BRARP	Uncharacterized protein. (493 aa)
	M4EDQ4_BRARP	Uncharacterized protein. (96 aa)
	M4ECZ6_BRARP	Uncharacterized protein. (78 aa)
	M4DW24_BRARP	Uncharacterized protein. (476 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CEY7_BRARP	M4CRJ7_BRARP	M4CEY7	M4CRJ7	Uncharacterized protein.	Uncharacterized protein.	0.900
M4CEY7_BRARP	M4DTQ6_BRARP	M4CEY7	M4DTQ6	Uncharacterized protein.	NnrU domain-containing protein.	0.497
M4CEY7_BRARP	M4EM05_BRARP	M4CEY7	M4EM05	Uncharacterized protein.	Uncharacterized protein.	0.911
M4CEY7_BRARP	M4FH33_BRARP	M4CEY7	M4FH33	Uncharacterized protein.	Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.	0.979
M4CRJ7_BRARP	M4CEY7_BRARP	M4CRJ7	M4CEY7	Uncharacterized protein.	Uncharacterized protein.	0.900
M4CRJ7_BRARP	M4DTQ6_BRARP	M4CRJ7	M4DTQ6	Uncharacterized protein.	NnrU domain-containing protein.	0.497
M4CRJ7_BRARP	M4EM05_BRARP	M4CRJ7	M4EM05	Uncharacterized protein.	Uncharacterized protein.	0.911
M4CRJ7_BRARP	M4FH33_BRARP	M4CRJ7	M4FH33	Uncharacterized protein.	Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.	0.979
M4DTQ6_BRARP	M4CEY7_BRARP	M4DTQ6	M4CEY7	NnrU domain-containing protein.	Uncharacterized protein.	0.497
M4DTQ6_BRARP	M4CRJ7_BRARP	M4DTQ6	M4CRJ7	NnrU domain-containing protein.	Uncharacterized protein.	0.497
M4DTQ6_BRARP	M4DW24_BRARP	M4DTQ6	M4DW24	NnrU domain-containing protein.	Uncharacterized protein.	0.497
M4DTQ6_BRARP	M4ECZ6_BRARP	M4DTQ6	M4ECZ6	NnrU domain-containing protein.	Uncharacterized protein.	0.497
M4DTQ6_BRARP	M4EDQ4_BRARP	M4DTQ6	M4EDQ4	NnrU domain-containing protein.	Uncharacterized protein.	0.497
M4DTQ6_BRARP	M4EM05_BRARP	M4DTQ6	M4EM05	NnrU domain-containing protein.	Uncharacterized protein.	0.661
M4DTQ6_BRARP	M4F900_BRARP	M4DTQ6	M4F900	NnrU domain-containing protein.	Uncharacterized protein.	0.497
M4DTQ6_BRARP	M4FH33_BRARP	M4DTQ6	M4FH33	NnrU domain-containing protein.	Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.	0.984
M4DW24_BRARP	M4DTQ6_BRARP	M4DW24	M4DTQ6	Uncharacterized protein.	NnrU domain-containing protein.	0.497
M4DW24_BRARP	M4FH33_BRARP	M4DW24	M4FH33	Uncharacterized protein.	Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.	0.508
M4ECZ6_BRARP	M4DTQ6_BRARP	M4ECZ6	M4DTQ6	Uncharacterized protein.	NnrU domain-containing protein.	0.497
M4ECZ6_BRARP	M4FH33_BRARP	M4ECZ6	M4FH33	Uncharacterized protein.	Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.	0.508

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