(136 nodes) Endosomal transport network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4DI22_BRARP	Uncharacterized protein. (708 aa)
	M4F0D9_BRARP	Uncharacterized protein. (651 aa)
	M4EZY3_BRARP	DUF2451 domain-containing protein. (670 aa)
	M4EZY2_BRARP	Vps54_N domain-containing protein. (378 aa)
	M4EY61_BRARP	Uncharacterized protein. (207 aa)
	M4EUF0_BRARP	Uncharacterized protein. (380 aa)
	M4ERN5_BRARP	Uncharacterized protein. (140 aa)
	M4ERI3_BRARP	Uncharacterized protein. (511 aa)
	M4EPC1_BRARP	Uncharacterized protein. (352 aa)
	M4ENW6_BRARP	Vps53_N domain-containing protein. (824 aa)
	M4ELF9_BRARP	DAO domain-containing protein. (370 aa)
	M4EL79_BRARP	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (209 aa)
	M4EL10_BRARP	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (546 aa)
	M4EK92_BRARP	Uncharacterized protein. (437 aa)
	M4EJD7_BRARP	Uncharacterized protein. (140 aa)
	M4EFJ7_BRARP	Uncharacterized protein. (224 aa)
	M4EDB9_BRARP	BRO1 domain-containing protein. (852 aa)
	M4EC97_BRARP	Uncharacterized protein. (419 aa)
	M4EC74_BRARP	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (250 aa)
	M4EC06_BRARP	Uncharacterized protein. (303 aa)
	M4EBK3_BRARP	BRO1 domain-containing protein. (864 aa)
	M4EAN3_BRARP	Uncharacterized protein. (1003 aa)
	M4EAI4_BRARP	Uncharacterized protein. (272 aa)
	M4E802_BRARP	Uncharacterized protein. (495 aa)
	M4E7P3_BRARP	GAT domain-containing protein. (109 aa)
	M4DA58_BRARP	Uncharacterized protein. (179 aa)
	M4DAE9_BRARP	Uncharacterized protein. (197 aa)
	M4DAM6_BRARP	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (209 aa)
	M4DCM2_BRARP	Uncharacterized protein. (581 aa)
	M4DCY0_BRARP	Uncharacterized protein. (209 aa)
	M4DEY3_BRARP	Uncharacterized protein. (156 aa)
	M4DFK7_BRARP	Uncharacterized protein. (211 aa)
	M4DG29_BRARP	Uncharacterized protein. (171 aa)
	M4DG61_BRARP	Uncharacterized protein. (330 aa)
	M4DGS8_BRARP	Uncharacterized protein. (444 aa)
	M4DH28_BRARP	Uncharacterized protein. (290 aa)
	M4DH29_BRARP	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (807 aa)
	M4DHP5_BRARP	Uncharacterized protein. (203 aa)
	M4DHS8_BRARP	Uncharacterized protein. (512 aa)
	M4F3Z4_BRARP	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (525 aa)
	M4DIT6_BRARP	Uncharacterized protein. (1140 aa)
	M4DIU8_BRARP	VHS domain-containing protein. (126 aa)
	M4DIX8_BRARP	Uncharacterized protein. (1135 aa)
	M4DLR6_BRARP	VHS domain-containing protein. (149 aa)
	M4DMK4_BRARP	Uncharacterized protein. (360 aa)
	M4DMY7_BRARP	Uncharacterized protein. (114 aa)
	M4DMY8_BRARP	Uncharacterized protein. (258 aa)
	M4DN23_BRARP	Uncharacterized protein. (496 aa)
	M4DN46_BRARP	Uncharacterized protein. (1233 aa)
	M4DNM3_BRARP	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (190 aa)
	M4DNS8_BRARP	Uncharacterized protein. (75 aa)
	M4DQD9_BRARP	Uncharacterized protein. (327 aa)
	M4DQN9_BRARP	Uncharacterized protein. (537 aa)
	M4DQS9_BRARP	Uncharacterized protein. (995 aa)
	M4DRD3_BRARP	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (250 aa)
	M4DSM1_BRARP	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (190 aa)
	M4DT51_BRARP	SEC7 domain-containing protein. (1448 aa)
	M4DUN3_BRARP	Uncharacterized protein. (230 aa)
	M4DWK2_BRARP	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (209 aa)
	M4DWN0_BRARP	Uncharacterized protein. (126 aa)
	M4DWN1_BRARP	Uncharacterized protein. (223 aa)
	M4DXX1_BRARP	Uncharacterized protein. (148 aa)
	M4DZV9_BRARP	Uncharacterized protein. (85 aa)
	M4E1K9_BRARP	Uncharacterized protein. (343 aa)
	M4E1S0_BRARP	Uncharacterized protein. (1259 aa)
	M4E1Z2_BRARP	Uncharacterized protein. (151 aa)
	M4E306_BRARP	SH3_15 domain-containing protein. (241 aa)
	M4E3B4_BRARP	Uncharacterized protein. (140 aa)
	M4E5V6_BRARP	Uncharacterized protein. (213 aa)
	M4E640_BRARP	Uncharacterized protein. (219 aa)
	M4E6G7_BRARP	Uncharacterized protein. (99 aa)
	M4CTR4_BRARP	RIC1 domain-containing protein. (1114 aa)
	M4CTW5_BRARP	Uncharacterized protein. (423 aa)
	M4CV22_BRARP	Uncharacterized protein. (174 aa)
	M4CW99_BRARP	Uncharacterized protein. (79 aa)
	M4CWI8_BRARP	Uncharacterized protein. (409 aa)
	M4CYS6_BRARP	Uncharacterized protein. (218 aa)
	M4CYW4_BRARP	GLUE N-terminal domain-containing protein. (436 aa)
	M4CYX5_BRARP	Uncharacterized protein. (240 aa)
	M4D0N0_BRARP	Uncharacterized protein. (110 aa)
	M4D122_BRARP	Uncharacterized protein. (157 aa)
	M4D3N1_BRARP	Uncharacterized protein. (212 aa)
	M4D4H4_BRARP	Uncharacterized protein. (653 aa)
	M4D593_BRARP	Uncharacterized protein. (317 aa)
	M4D5R1_BRARP	Uncharacterized protein. (223 aa)
	M4D6A0_BRARP	Uncharacterized protein; Belongs to the AAA ATPase family. (433 aa)
	M4D6R4_BRARP	FPL domain-containing protein. (626 aa)
	M4D6Y7_BRARP	Uncharacterized protein. (1000 aa)
	M4D719_BRARP	Uncharacterized protein. (479 aa)
	M4D728_BRARP	Uncharacterized protein. (1133 aa)
	M4D7S9_BRARP	Vps54 domain-containing protein. (1035 aa)
	M4D994_BRARP	Uncharacterized protein. (79 aa)
	M4D9K3_BRARP	Uncharacterized protein. (225 aa)
	M4C757_BRARP	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family. (820 aa)
	M4C827_BRARP	Uncharacterized protein. (208 aa)
	M4C8H1_BRARP	DUF2451 domain-containing protein. (665 aa)
	M4C8H2_BRARP	Vps54_N domain-containing protein. (499 aa)
	M4C8H5_BRARP	Uncharacterized protein; Belongs to the AAA ATPase family. (433 aa)
	M4CAZ2_BRARP	Uncharacterized protein. (234 aa)
	M4CB28_BRARP	Uncharacterized protein. (138 aa)
	M4CD10_BRARP	Uncharacterized protein. (302 aa)
	M4CD11_BRARP	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (788 aa)
	M4CE12_BRARP	Uncharacterized protein. (229 aa)
	M4CE15_BRARP	Uncharacterized protein. (94 aa)
	M4CFK9_BRARP	Foie-gras_1 domain-containing protein. (1257 aa)
	M4CFR7_BRARP	Uncharacterized protein. (302 aa)
	M4CHL2_BRARP	Uncharacterized protein. (531 aa)
	M4CI26_BRARP	Uncharacterized protein. (203 aa)
	M4CKW4_BRARP	Uncharacterized protein. (208 aa)
	M4CLM3_BRARP	Uncharacterized protein. (720 aa)
	M4CN79_BRARP	Uncharacterized protein. (565 aa)
	M4CN98_BRARP	Uncharacterized protein. (140 aa)
	M4CNN5_BRARP	Uncharacterized protein. (238 aa)
	M4CPB6_BRARP	Uncharacterized protein. (207 aa)
	M4CPR6_BRARP	Uncharacterized protein. (1608 aa)
	M4CQ86_BRARP	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (613 aa)
	M4CQ88_BRARP	Uncharacterized protein. (406 aa)
	M4CR04_BRARP	Uncharacterized protein. (229 aa)
	80A08_22	80A08_22. (206 aa)
	M4FH08_BRARP	Uncharacterized protein. (274 aa)
	M4FG34_BRARP	Uncharacterized protein. (629 aa)
	M4FD53_BRARP	Uncharacterized protein. (215 aa)
	M4FCN5_BRARP	FPL domain-containing protein. (1017 aa)
	M4FC35_BRARP	VHS domain-containing protein. (432 aa)
	M4FBR9_BRARP	Uncharacterized protein. (207 aa)
	M4FAZ3_BRARP	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (570 aa)
	M4FAX2_BRARP	Uncharacterized protein. (1103 aa)
	M4FAL6_BRARP	Uncharacterized protein. (104 aa)
	M4F9N9_BRARP	Uncharacterized protein. (197 aa)
	M4F978_BRARP	Uncharacterized protein. (208 aa)
	M4F838_BRARP	Uncharacterized protein. (283 aa)
	M4F7I2_BRARP	Uncharacterized protein. (649 aa)
	M4F6V8_BRARP	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (793 aa)
	M4F6J0_BRARP	Uncharacterized protein. (212 aa)
	M4F5E3_BRARP	Uncharacterized protein. (761 aa)
	M4F4Y1_BRARP	Uncharacterized protein. (127 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
80A08_22	M4CTR4_BRARP	Q4ABP5	M4CTR4	80A08_22.	RIC1 domain-containing protein.	0.928
80A08_22	M4D7S9_BRARP	Q4ABP5	M4D7S9	80A08_22.	Vps54 domain-containing protein.	0.801
80A08_22	M4DCM2_BRARP	Q4ABP5	M4DCM2	80A08_22.	Uncharacterized protein.	0.709
80A08_22	M4DI22_BRARP	Q4ABP5	M4DI22	80A08_22.	Uncharacterized protein.	0.885
80A08_22	M4DQN9_BRARP	Q4ABP5	M4DQN9	80A08_22.	Uncharacterized protein.	0.709
80A08_22	M4ENW6_BRARP	Q4ABP5	M4ENW6	80A08_22.	Vps53_N domain-containing protein.	0.846
80A08_22	M4F5E3_BRARP	Q4ABP5	M4F5E3	80A08_22.	Uncharacterized protein.	0.697
M4C757_BRARP	M4CD10_BRARP	M4C757	M4CD10	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Uncharacterized protein.	0.432
M4C757_BRARP	M4CD11_BRARP	M4C757	M4CD11	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.432
M4C757_BRARP	M4CYW4_BRARP	M4C757	M4CYW4	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	GLUE N-terminal domain-containing protein.	0.509
M4C757_BRARP	M4D593_BRARP	M4C757	M4D593	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Uncharacterized protein.	0.432
M4C757_BRARP	M4D7S9_BRARP	M4C757	M4D7S9	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Vps54 domain-containing protein.	0.577
M4C757_BRARP	M4DH28_BRARP	M4C757	M4DH28	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Uncharacterized protein.	0.432
M4C757_BRARP	M4DH29_BRARP	M4C757	M4DH29	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.432
M4C757_BRARP	M4DI22_BRARP	M4C757	M4DI22	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Uncharacterized protein.	0.617
M4C757_BRARP	M4DMK4_BRARP	M4C757	M4DMK4	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Uncharacterized protein.	0.432
M4C757_BRARP	M4DQD9_BRARP	M4C757	M4DQD9	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Uncharacterized protein.	0.479
M4C757_BRARP	M4EAI4_BRARP	M4C757	M4EAI4	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Uncharacterized protein.	0.432
M4C757_BRARP	M4EC97_BRARP	M4C757	M4EC97	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Uncharacterized protein.	0.524
M4C757_BRARP	M4ENW6_BRARP	M4C757	M4ENW6	Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.	Vps53_N domain-containing protein.	0.537

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