9 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4ES40_BRARP	Uncharacterized protein. (267 aa)
	M4EPJ8_BRARP	Uncharacterized protein. (274 aa)
	M4DXW4_BRARP	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family. (194 aa)
	M4DPB9_BRARP	Uncharacterized protein. (75 aa)
	M4DZE4_BRARP	Uncharacterized protein. (245 aa)
	M4DLB1_BRARP	Uncharacterized protein. (247 aa)
	M4E2M8_BRARP	Uncharacterized protein. (244 aa)
	M4CMM1_BRARP	Uncharacterized protein. (224 aa)
	M4E9U9_BRARP	Uncharacterized protein. (325 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CMM1_BRARP	M4DLB1_BRARP	M4CMM1	M4DLB1	Uncharacterized protein.	Uncharacterized protein.	0.437
M4CMM1_BRARP	M4DPB9_BRARP	M4CMM1	M4DPB9	Uncharacterized protein.	Uncharacterized protein.	0.674
M4CMM1_BRARP	M4DXW4_BRARP	M4CMM1	M4DXW4	Uncharacterized protein.	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.571
M4CMM1_BRARP	M4E2M8_BRARP	M4CMM1	M4E2M8	Uncharacterized protein.	Uncharacterized protein.	0.437
M4CMM1_BRARP	M4E9U9_BRARP	M4CMM1	M4E9U9	Uncharacterized protein.	Uncharacterized protein.	0.674
M4DLB1_BRARP	M4CMM1_BRARP	M4DLB1	M4CMM1	Uncharacterized protein.	Uncharacterized protein.	0.437
M4DLB1_BRARP	M4DPB9_BRARP	M4DLB1	M4DPB9	Uncharacterized protein.	Uncharacterized protein.	0.549
M4DLB1_BRARP	M4DZE4_BRARP	M4DLB1	M4DZE4	Uncharacterized protein.	Uncharacterized protein.	0.437
M4DLB1_BRARP	M4E9U9_BRARP	M4DLB1	M4E9U9	Uncharacterized protein.	Uncharacterized protein.	0.549
M4DPB9_BRARP	M4CMM1_BRARP	M4DPB9	M4CMM1	Uncharacterized protein.	Uncharacterized protein.	0.674
M4DPB9_BRARP	M4DLB1_BRARP	M4DPB9	M4DLB1	Uncharacterized protein.	Uncharacterized protein.	0.549
M4DPB9_BRARP	M4DXW4_BRARP	M4DPB9	M4DXW4	Uncharacterized protein.	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	0.572
M4DPB9_BRARP	M4DZE4_BRARP	M4DPB9	M4DZE4	Uncharacterized protein.	Uncharacterized protein.	0.674
M4DPB9_BRARP	M4E2M8_BRARP	M4DPB9	M4E2M8	Uncharacterized protein.	Uncharacterized protein.	0.549
M4DXW4_BRARP	M4CMM1_BRARP	M4DXW4	M4CMM1	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	Uncharacterized protein.	0.571
M4DXW4_BRARP	M4DPB9_BRARP	M4DXW4	M4DPB9	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	Uncharacterized protein.	0.572
M4DXW4_BRARP	M4DZE4_BRARP	M4DXW4	M4DZE4	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	Uncharacterized protein.	0.571
M4DXW4_BRARP	M4E9U9_BRARP	M4DXW4	M4E9U9	Mitochondrial inner membrane protease ATP23; Belongs to the peptidase M76 family.	Uncharacterized protein.	0.572
M4DZE4_BRARP	M4DLB1_BRARP	M4DZE4	M4DLB1	Uncharacterized protein.	Uncharacterized protein.	0.437
M4DZE4_BRARP	M4DPB9_BRARP	M4DZE4	M4DPB9	Uncharacterized protein.	Uncharacterized protein.	0.674

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