39 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4ESM8_BRARP	WD_REPEATS_REGION domain-containing protein. (335 aa)
	M4FJ41_BRARP	Uncharacterized protein. (71 aa)
	M4FIA9_BRARP	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (932 aa)
	M4FHU9_BRARP	WD_REPEATS_REGION domain-containing protein. (497 aa)
	M4FH63_BRARP	DDE Tnp4 domain-containing protein. (385 aa)
	M4FCF6_BRARP	Uncharacterized protein. (918 aa)
	M4F6K7_BRARP	WD_REPEATS_REGION domain-containing protein. (480 aa)
	M4F6B1_BRARP	PWWP domain-containing protein. (1030 aa)
	M4F3V1_BRARP	Uncharacterized protein. (379 aa)
	M4F3V0_BRARP	WD_REPEATS_REGION domain-containing protein. (298 aa)
	M4F3U8_BRARP	WD_REPEATS_REGION domain-containing protein. (379 aa)
	M4F3C8_BRARP	FHA domain-containing protein. (195 aa)
	NTH1-2	Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines. (1088 aa)
	M4EQL4_BRARP	WD_REPEATS_REGION domain-containing protein. (504 aa)
	M4EPN4_BRARP	Uncharacterized protein. (902 aa)
	M4EJ91_BRARP	PWWP domain-containing protein. (460 aa)
	M4EI40_BRARP	PWWP domain-containing protein. (889 aa)
	M4EGR9_BRARP	Uncharacterized protein. (1297 aa)
	M4E950_BRARP	PWWP domain-containing protein. (529 aa)
	M4E579_BRARP	WD_REPEATS_REGION domain-containing protein. (369 aa)
	M4E554_BRARP	WD_REPEATS_REGION domain-containing protein. (547 aa)
	M4E3X0_BRARP	WD_REPEATS_REGION domain-containing protein. (332 aa)
	M4DYX4_BRARP	Uncharacterized protein. (962 aa)
	M4DSW7_BRARP	WD_REPEATS_REGION domain-containing protein. (317 aa)
	M4DQW7_BRARP	B30.2/SPRY domain-containing protein. (421 aa)
	M4DN78_BRARP	WD_REPEATS_REGION domain-containing protein. (137 aa)
	M4DJX3_BRARP	Uncharacterized protein. (850 aa)
	M4DH59_BRARP	FHA domain-containing protein. (543 aa)
	M4DE99_BRARP	FHA domain-containing protein. (714 aa)
	M4DE71_BRARP	Uncharacterized protein. (710 aa)
	M4DE69_BRARP	Uncharacterized protein. (724 aa)
	M4DAL5_BRARP	Uncharacterized protein. (915 aa)
	M4D9J1_BRARP	Uncharacterized protein. (236 aa)
	M4D8L4_BRARP	WD_REPEATS_REGION domain-containing protein. (423 aa)
	M4D3S9_BRARP	WD_REPEATS_REGION domain-containing protein. (476 aa)
	M4CGY4_BRARP	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily. (1035 aa)
	M4CG46_BRARP	FHA domain-containing protein. (556 aa)
	M4CFS4_BRARP	Uncharacterized protein. (723 aa)
	M4CAS2_BRARP	Uncharacterized protein. (338 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CFS4_BRARP	M4DQW7_BRARP	M4CFS4	M4DQW7	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.975
M4CFS4_BRARP	M4E3X0_BRARP	M4CFS4	M4E3X0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.882
M4CFS4_BRARP	M4E554_BRARP	M4CFS4	M4E554	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.975
M4CFS4_BRARP	M4E579_BRARP	M4CFS4	M4E579	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.477
M4CFS4_BRARP	M4ESM8_BRARP	M4CFS4	M4ESM8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.882
M4CFS4_BRARP	M4F3U8_BRARP	M4CFS4	M4F3U8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.477
M4CFS4_BRARP	M4F3V0_BRARP	M4CFS4	M4F3V0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.477
M4CFS4_BRARP	M4F3V1_BRARP	M4CFS4	M4F3V1	Uncharacterized protein.	Uncharacterized protein.	0.477
M4CFS4_BRARP	M4FJ41_BRARP	M4CFS4	M4FJ41	Uncharacterized protein.	Uncharacterized protein.	0.477
M4CG46_BRARP	M4DE99_BRARP	M4CG46	M4DE99	FHA domain-containing protein.	FHA domain-containing protein.	0.546
M4CG46_BRARP	M4DH59_BRARP	M4CG46	M4DH59	FHA domain-containing protein.	FHA domain-containing protein.	0.600
M4CG46_BRARP	M4F3C8_BRARP	M4CG46	M4F3C8	FHA domain-containing protein.	FHA domain-containing protein.	0.568
M4CGY4_BRARP	M4DN78_BRARP	M4CGY4	M4DN78	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	WD_REPEATS_REGION domain-containing protein.	0.434
M4CGY4_BRARP	M4DQW7_BRARP	M4CGY4	M4DQW7	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	B30.2/SPRY domain-containing protein.	0.975
M4CGY4_BRARP	M4DSW7_BRARP	M4CGY4	M4DSW7	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	WD_REPEATS_REGION domain-containing protein.	0.434
M4CGY4_BRARP	M4E3X0_BRARP	M4CGY4	M4E3X0	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	WD_REPEATS_REGION domain-containing protein.	0.877
M4CGY4_BRARP	M4E554_BRARP	M4CGY4	M4E554	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	WD_REPEATS_REGION domain-containing protein.	0.977
M4CGY4_BRARP	M4E579_BRARP	M4CGY4	M4E579	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	WD_REPEATS_REGION domain-containing protein.	0.477
M4CGY4_BRARP	M4ESM8_BRARP	M4CGY4	M4ESM8	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	WD_REPEATS_REGION domain-containing protein.	0.877
M4CGY4_BRARP	M4F3U8_BRARP	M4CGY4	M4F3U8	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	WD_REPEATS_REGION domain-containing protein.	0.477

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