(110 nodes) Post-transcriptional gene silencing by RNA network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4DRT7_BRARP	Uncharacterized protein. (365 aa)
	M4DS95_BRARP	FBD domain-containing protein. (198 aa)
	M4DSG3_BRARP	Uncharacterized protein. (1447 aa)
	M4DU06_BRARP	Uncharacterized protein. (274 aa)
	M4DUF9_BRARP	Uncharacterized protein. (906 aa)
	M4DXP7_BRARP	Uncharacterized protein. (133 aa)
	M4DZW0_BRARP	Piwi domain-containing protein. (216 aa)
	M4E0E1_BRARP	Uncharacterized protein. (1152 aa)
	M4E0I2_BRARP	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1169 aa)
	M4E2B8_BRARP	Uncharacterized protein. (867 aa)
	M4E321_BRARP	Uncharacterized protein; Belongs to the argonaute family. (1037 aa)
	M4E3N4_BRARP	Uncharacterized protein. (1248 aa)
	M4E523_BRARP	NYN domain-containing protein. (224 aa)
	M4E525_BRARP	NYN domain-containing protein. (173 aa)
	M4E527_BRARP	Uncharacterized protein. (578 aa)
	M4E528_BRARP	Uncharacterized protein. (445 aa)
	M4E6Z8_BRARP	Uncharacterized protein. (177 aa)
	M4ECS4_BRARP	NYN domain-containing protein. (268 aa)
	M4EER4_BRARP	Exonuclease domain-containing protein. (324 aa)
	M4EFE3_BRARP	Piwi domain-containing protein. (140 aa)
	M4EFP9_BRARP	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1443 aa)
	M4EJ27_BRARP	Uncharacterized protein. (267 aa)
	M4EJ33_BRARP	Uncharacterized protein. (439 aa)
	M4EJ34_BRARP	Uncharacterized protein. (487 aa)
	M4EJ35_BRARP	Uncharacterized protein. (392 aa)
	M4EJ36_BRARP	Uncharacterized protein. (395 aa)
	M4C794_BRARP	Uncharacterized protein. (217 aa)
	M4C7I4_BRARP	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2059 aa)
	M4C9I1_BRARP	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (115 aa)
	M4CAN1_BRARP	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (168 aa)
	M4CDL2_BRARP	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1641 aa)
	M4CDS9_BRARP	Uncharacterized protein. (930 aa)
	M4CDT0_BRARP	Uncharacterized protein. (911 aa)
	M4CGX5_BRARP	F-box domain-containing protein. (408 aa)
	M4CHZ3_BRARP	Uncharacterized protein. (384 aa)
	M4CIG5_BRARP	Uncharacterized protein; Belongs to the argonaute family. (981 aa)
	M4CJ73_BRARP	NYN domain-containing protein. (172 aa)
	M4CJE0_BRARP	Uncharacterized protein. (397 aa)
	M4CJM7_BRARP	Uncharacterized protein. (468 aa)
	M4CP43_BRARP	Uncharacterized protein. (741 aa)
	M4CTI2_BRARP	NYN domain-containing protein. (208 aa)
	M4CTI3_BRARP	NYN domain-containing protein. (271 aa)
	M4CTS2_BRARP	F-box domain-containing protein. (404 aa)
	M4CTV9_BRARP	NYN domain-containing protein. (154 aa)
	M4CTW0_BRARP	NYN domain-containing protein. (160 aa)
	M4CTX4_BRARP	Uncharacterized protein. (652 aa)
	M4CU08_BRARP	Uncharacterized protein. (330 aa)
	M4CXY2_BRARP	Uncharacterized protein. (852 aa)
	M4CZP8_BRARP	Uncharacterized protein. (606 aa)
	M4CZR5_BRARP	Cleavage and polyadenylation specificity factor subunit 2. (739 aa)
	M4CZY8_BRARP	Uncharacterized protein. (505 aa)
	M4D5K8_BRARP	NYN domain-containing protein. (420 aa)
	M4D5K9_BRARP	NYN domain-containing protein. (528 aa)
	M4D5Z6_BRARP	Uncharacterized protein. (202 aa)
	M4D663_BRARP	Sod_Cu domain-containing protein. (203 aa)
	M4D685_BRARP	Uncharacterized protein; Belongs to the argonaute family. (966 aa)
	M4D7W2_BRARP	NYN domain-containing protein. (233 aa)
	M4D7W3_BRARP	C2H2-type domain-containing protein. (447 aa)
	M4D818_BRARP	Uncharacterized protein. (445 aa)
	M4D919_BRARP	C2H2-type domain-containing protein. (735 aa)
	M4D9I5_BRARP	MIF4G domain-containing protein. (845 aa)
	M4DAH2_BRARP	HTH La-type RNA-binding domain-containing protein. (1145 aa)
	M4DBW9_BRARP	NYN domain-containing protein. (250 aa)
	M4DCC3_BRARP	Uncharacterized protein; Belongs to the argonaute family. (1079 aa)
	M4DCY4_BRARP	RPOL4c domain-containing protein. (187 aa)
	M4DD61_BRARP	F-box domain-containing protein. (421 aa)
	M4DDZ9_BRARP	NYN domain-containing protein. (623 aa)
	M4DE77_BRARP	Uncharacterized protein. (683 aa)
	M4DFE9_BRARP	Uncharacterized protein. (468 aa)
	M4DFS4_BRARP	Uncharacterized protein. (397 aa)
	M4DG04_BRARP	Uncharacterized protein. (1004 aa)
	M4DHI2_BRARP	Uncharacterized protein. (365 aa)
	M4DJV6_BRARP	NYN domain-containing protein. (269 aa)
	M4DMT5_BRARP	Uncharacterized protein. (99 aa)
	M4EJ37_BRARP	Uncharacterized protein. (362 aa)
	M4EJ43_BRARP	Uncharacterized protein. (656 aa)
	M4EJD4_BRARP	Uncharacterized protein. (1515 aa)
	M4EKB9_BRARP	NYN domain-containing protein. (571 aa)
	M4EKL2_BRARP	Uncharacterized protein. (630 aa)
	M4EKL3_BRARP	NYN domain-containing protein. (230 aa)
	M4ELJ4_BRARP	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (118 aa)
	M4EPS2_BRARP	Uncharacterized protein. (278 aa)
	M4ES64_BRARP	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (152 aa)
	M4ES92_BRARP	NYN domain-containing protein. (120 aa)
	M4ESX7_BRARP	Uncharacterized protein. (696 aa)
	M4ET69_BRARP	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1277 aa)
	M4ETB6_BRARP	Uncharacterized protein. (306 aa)
	M4ETX2_BRARP	Uncharacterized protein; Belongs to the argonaute family. (1111 aa)
	M4EU91_BRARP	Uncharacterized protein. (157 aa)
	M4EWV8_BRARP	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1846 aa)
	M4EY08_BRARP	Uncharacterized protein; Belongs to the argonaute family. (974 aa)
	M4EY38_BRARP	Nuclear cap-binding protein subunit 2. (264 aa)
	AGO4	Argonaute 4. (922 aa)
	M4F001_BRARP	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (207 aa)
	M4F0Q1_BRARP	NYN domain-containing protein. (160 aa)
	M4F2F1_BRARP	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1122 aa)
	M4F476_BRARP	Uncharacterized protein. (1450 aa)
	M4F477_BRARP	Uncharacterized protein. (1394 aa)
	M4F4D8_BRARP	ANK_REP_REGION domain-containing protein. (830 aa)
	M4F5S9_BRARP	C2H2-type domain-containing protein. (280 aa)
	M4F7Z8_BRARP	Uncharacterized protein. (87 aa)
	M4F8T4_BRARP	Uncharacterized protein. (99 aa)
	M4FBB9_BRARP	Uncharacterized protein. (121 aa)
	M4FBY9_BRARP	NYN domain-containing protein. (147 aa)
	M4FC71_BRARP	Uncharacterized protein. (271 aa)
	M4FFZ4_BRARP	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (112 aa)
	M4FGE6_BRARP	Uncharacterized protein. (430 aa)
	M4FI86_BRARP	Uncharacterized protein; Belongs to the argonaute family. (1009 aa)
	M4FIB9_BRARP	NYN domain-containing protein. (195 aa)
	M4FIT1_BRARP	Uncharacterized protein. (478 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGO4	M4C7I4_BRARP	M4EZS5	M4C7I4	Argonaute 4.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.931
AGO4	M4CDL2_BRARP	M4EZS5	M4CDL2	Argonaute 4.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.889
AGO4	M4CU08_BRARP	M4EZS5	M4CU08	Argonaute 4.	Uncharacterized protein.	0.457
AGO4	M4CZP8_BRARP	M4EZS5	M4CZP8	Argonaute 4.	Uncharacterized protein.	0.518
AGO4	M4DAH2_BRARP	M4EZS5	M4DAH2	Argonaute 4.	HTH La-type RNA-binding domain-containing protein.	0.523
AGO4	M4DG04_BRARP	M4EZS5	M4DG04	Argonaute 4.	Uncharacterized protein.	0.459
AGO4	M4DSG3_BRARP	M4EZS5	M4DSG3	Argonaute 4.	Uncharacterized protein.	0.823
AGO4	M4DXP7_BRARP	M4EZS5	M4DXP7	Argonaute 4.	Uncharacterized protein.	0.558
AGO4	M4E0I2_BRARP	M4EZS5	M4E0I2	Argonaute 4.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.558
AGO4	M4EFP9_BRARP	M4EZS5	M4EFP9	Argonaute 4.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.705
AGO4	M4ET69_BRARP	M4EZS5	M4ET69	Argonaute 4.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.809
AGO4	M4EWV8_BRARP	M4EZS5	M4EWV8	Argonaute 4.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.809
AGO4	M4F2F1_BRARP	M4EZS5	M4F2F1	Argonaute 4.	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family.	0.820
AGO4	M4FIT1_BRARP	M4EZS5	M4FIT1	Argonaute 4.	Uncharacterized protein.	0.705
M4C794_BRARP	M4E523_BRARP	M4C794	M4E523	Uncharacterized protein.	NYN domain-containing protein.	0.424
M4C7I4_BRARP	AGO4	M4C7I4	M4EZS5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Argonaute 4.	0.931
M4C7I4_BRARP	M4CDL2_BRARP	M4C7I4	M4CDL2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.719
M4C7I4_BRARP	M4CDS9_BRARP	M4C7I4	M4CDS9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.900
M4C7I4_BRARP	M4CDT0_BRARP	M4C7I4	M4CDT0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.900
M4C7I4_BRARP	M4CIG5_BRARP	M4C7I4	M4CIG5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein; Belongs to the argonaute family.	0.881

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