(26 nodes) Autophagy of nucleus network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4FA60_BRARP	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family. (85 aa)
	M4DKD9_BRARP	Uncharacterized protein. (408 aa)
	M4DD25_BRARP	Uncharacterized protein. (409 aa)
	M4D8Z0_BRARP	Autophagy-related protein 3. (309 aa)
	M4D418_BRARP	ATG11 domain-containing protein. (1128 aa)
	M4CU06_BRARP	Uncharacterized protein. (430 aa)
	M4CWG7_BRARP	Autophagy protein 5; Required for autophagy. (335 aa)
	M4E5I9_BRARP	ATG11 domain-containing protein. (1100 aa)
	M4CGZ8_BRARP	Protein kinase domain-containing protein. (609 aa)
	M4EF20_BRARP	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family. (89 aa)
	M4CSQ5_BRARP	F-box domain-containing protein. (799 aa)
	M4CNQ6_BRARP	Uncharacterized protein. (377 aa)
	M4CH26_BRARP	Uncharacterized protein. (416 aa)
	M4DN86_BRARP	Uncharacterized protein. (317 aa)
	M4DSV9_BRARP	Uncharacterized protein. (563 aa)
	M4DYW7_BRARP	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (857 aa)
	M4D1C4_BRARP	ATG11 domain-containing protein. (1165 aa)
	M4DZQ2_BRARP	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (697 aa)
	M4E0Q6_BRARP	ATG13 domain-containing protein. (434 aa)
	M4E0U6_BRARP	Uncharacterized protein. (1878 aa)
	M4E4A6_BRARP	Autophagy protein 5; Required for autophagy. (341 aa)
	M4CTV1_BRARP	Protein kinase domain-containing protein. (599 aa)
	M4E5L6_BRARP	Uncharacterized protein. (366 aa)
	M4EIS4_BRARP	Autophagy-related protein 3. (306 aa)
	M4EJ55_BRARP	Uncharacterized protein. (253 aa)
	M4F901_BRARP	ATG13 domain-containing protein. (590 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CGZ8_BRARP	M4CWG7_BRARP	M4CGZ8	M4CWG7	Protein kinase domain-containing protein.	Autophagy protein 5; Required for autophagy.	0.897
M4CGZ8_BRARP	M4D1C4_BRARP	M4CGZ8	M4D1C4	Protein kinase domain-containing protein.	ATG11 domain-containing protein.	0.905
M4CGZ8_BRARP	M4D418_BRARP	M4CGZ8	M4D418	Protein kinase domain-containing protein.	ATG11 domain-containing protein.	0.905
M4CGZ8_BRARP	M4D8Z0_BRARP	M4CGZ8	M4D8Z0	Protein kinase domain-containing protein.	Autophagy-related protein 3.	0.833
M4CGZ8_BRARP	M4DN86_BRARP	M4CGZ8	M4DN86	Protein kinase domain-containing protein.	Uncharacterized protein.	0.909
M4CGZ8_BRARP	M4DSV9_BRARP	M4CGZ8	M4DSV9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.909
M4CGZ8_BRARP	M4DYW7_BRARP	M4CGZ8	M4DYW7	Protein kinase domain-containing protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.948
M4CGZ8_BRARP	M4DZQ2_BRARP	M4CGZ8	M4DZQ2	Protein kinase domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.581
M4CGZ8_BRARP	M4E0Q6_BRARP	M4CGZ8	M4E0Q6	Protein kinase domain-containing protein.	ATG13 domain-containing protein.	0.921
M4CGZ8_BRARP	M4E0U6_BRARP	M4CGZ8	M4E0U6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.944
M4CGZ8_BRARP	M4E4A6_BRARP	M4CGZ8	M4E4A6	Protein kinase domain-containing protein.	Autophagy protein 5; Required for autophagy.	0.897
M4CGZ8_BRARP	M4E5I9_BRARP	M4CGZ8	M4E5I9	Protein kinase domain-containing protein.	ATG11 domain-containing protein.	0.905
M4CGZ8_BRARP	M4E5L6_BRARP	M4CGZ8	M4E5L6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.918
M4CGZ8_BRARP	M4EF20_BRARP	M4CGZ8	M4EF20	Protein kinase domain-containing protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.	0.897
M4CGZ8_BRARP	M4EIS4_BRARP	M4CGZ8	M4EIS4	Protein kinase domain-containing protein.	Autophagy-related protein 3.	0.833
M4CGZ8_BRARP	M4EJ55_BRARP	M4CGZ8	M4EJ55	Protein kinase domain-containing protein.	Uncharacterized protein.	0.833
M4CGZ8_BRARP	M4F901_BRARP	M4CGZ8	M4F901	Protein kinase domain-containing protein.	ATG13 domain-containing protein.	0.921
M4CGZ8_BRARP	M4FA60_BRARP	M4CGZ8	M4FA60	Protein kinase domain-containing protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.	0.897
M4CH26_BRARP	M4CWG7_BRARP	M4CH26	M4CWG7	Uncharacterized protein.	Autophagy protein 5; Required for autophagy.	0.455
M4CH26_BRARP	M4D8Z0_BRARP	M4CH26	M4D8Z0	Uncharacterized protein.	Autophagy-related protein 3.	0.468

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