22 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4EPS9_BRARP	COBRA-like protein; Belongs to the COBRA family. (417 aa)
	M4EVS9_BRARP	t-SNARE coiled-coil homology domain-containing protein. (245 aa)
	M4F4E8_BRARP	Uncharacterized protein. (97 aa)
	M4F4F1_BRARP	COBRA-like protein; Belongs to the COBRA family. (458 aa)
	M4F978_BRARP	Uncharacterized protein. (208 aa)
	M4FDJ2_BRARP	COBRA-like protein; Belongs to the COBRA family. (455 aa)
	M4FHK9_BRARP	COBRA-like protein; Belongs to the COBRA family. (439 aa)
	M4FIG8_BRARP	Uncharacterized protein. (137 aa)
	M4C7R2_BRARP	Uncharacterized protein. (766 aa)
	M4E9F0_BRARP	COBRA-like protein; Belongs to the COBRA family. (436 aa)
	M4E425_BRARP	COBRA-like protein; Belongs to the COBRA family. (434 aa)
	M4DTZ9_BRARP	COBRA-like protein; Belongs to the COBRA family. (397 aa)
	M4D936_BRARP	COBRA-like protein; Belongs to the COBRA family. (457 aa)
	M4D933_BRARP	Uncharacterized protein. (206 aa)
	M4D313_BRARP	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (245 aa)
	M4CWT7_BRARP	Uncharacterized protein. (387 aa)
	M4CQ24_BRARP	F-box domain-containing protein. (849 aa)
	M4CKW4_BRARP	Uncharacterized protein. (208 aa)
	M4CKB3_BRARP	Uncharacterized protein. (754 aa)
	M4CHK1_BRARP	C2 domain-containing protein. (2118 aa)
	M4C827_BRARP	Uncharacterized protein. (208 aa)
	M4EKM9_BRARP	Uncharacterized protein. (123 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C827_BRARP	M4D313_BRARP	M4C827	M4D313	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.502
M4C827_BRARP	M4EVS9_BRARP	M4C827	M4EVS9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.502
M4CKW4_BRARP	M4D313_BRARP	M4CKW4	M4D313	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.502
M4CKW4_BRARP	M4EVS9_BRARP	M4CKW4	M4EVS9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.502
M4D313_BRARP	M4C827_BRARP	M4D313	M4C827	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.502
M4D313_BRARP	M4CKW4_BRARP	M4D313	M4CKW4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.502
M4D313_BRARP	M4EVS9_BRARP	M4D313	M4EVS9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.900
M4D313_BRARP	M4F978_BRARP	M4D313	M4F978	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.502
M4EKM9_BRARP	M4F4E8_BRARP	M4EKM9	M4F4E8	Uncharacterized protein.	Uncharacterized protein.	0.537
M4EVS9_BRARP	M4C827_BRARP	M4EVS9	M4C827	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.502
M4EVS9_BRARP	M4CKW4_BRARP	M4EVS9	M4CKW4	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.502
M4EVS9_BRARP	M4D313_BRARP	M4EVS9	M4D313	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.900
M4EVS9_BRARP	M4F978_BRARP	M4EVS9	M4F978	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.502
M4F4E8_BRARP	M4EKM9_BRARP	M4F4E8	M4EKM9	Uncharacterized protein.	Uncharacterized protein.	0.537
M4F978_BRARP	M4D313_BRARP	M4F978	M4D313	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.502
M4F978_BRARP	M4EVS9_BRARP	M4F978	M4EVS9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.502

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