(41 nodes) RNA polymerase binding network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CGZ1_BRARP	Uncharacterized protein. (667 aa)
	M4CIY7_BRARP	C2H2-type domain-containing protein. (224 aa)
	M4CM28_BRARP	Uncharacterized protein. (999 aa)
	M4CMF8_BRARP	Uncharacterized protein. (628 aa)
	M4CMK2_BRARP	TFIIS N-terminal domain-containing protein. (390 aa)
	M4CP69_BRARP	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (116 aa)
	M4CX97_BRARP	Repressor of RNA polymerase III transcription. (224 aa)
	M4CXW4_BRARP	Uncharacterized protein. (75 aa)
	M4CZD5_BRARP	Uncharacterized protein. (576 aa)
	M4D0B9_BRARP	Uncharacterized protein. (303 aa)
	M4D565_BRARP	Uncharacterized protein. (467 aa)
	M4D9K2_BRARP	Uncharacterized protein. (1051 aa)
	M4DL52_BRARP	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family. (1323 aa)
	M4DVL3_BRARP	RTR1-type domain-containing protein. (830 aa)
	M4DZI1_BRARP	Uncharacterized protein. (598 aa)
	M4DZR4_BRARP	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (125 aa)
	M4E0Z8_BRARP	Uncharacterized protein. (1119 aa)
	M4E113_BRARP	Uncharacterized protein. (823 aa)
	M4E2I8_BRARP	Uncharacterized protein. (584 aa)
	M4E391_BRARP	TFIIS N-terminal domain-containing protein. (497 aa)
	M4E4M3_BRARP	Uncharacterized protein. (147 aa)
	M4E669_BRARP	Uncharacterized protein. (607 aa)
	M4E8D7_BRARP	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (126 aa)
	M4E8Y4_BRARP	CID domain-containing protein. (505 aa)
	M4EK89_BRARP	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (116 aa)
	M4EKL5_BRARP	Uncharacterized protein. (626 aa)
	M4EL59_BRARP	CID domain-containing protein. (772 aa)
	M4ERN3_BRARP	Plus3 domain-containing protein. (630 aa)
	M4EXZ9_BRARP	Uncharacterized protein. (725 aa)
	M4EYG2_BRARP	Uncharacterized protein. (203 aa)
	M4EYG5_BRARP	Uncharacterized protein. (60 aa)
	M4EZM4_BRARP	Uncharacterized protein. (2074 aa)
	M4F4E0_BRARP	Uncharacterized protein. (622 aa)
	M4F806_BRARP	Uncharacterized protein. (381 aa)
	M4F888_BRARP	Uncharacterized protein. (1869 aa)
	M4F9R4_BRARP	Uncharacterized protein. (1012 aa)
	M4FDC9_BRARP	CID domain-containing protein. (458 aa)
	M4FET1_BRARP	Uncharacterized protein. (364 aa)
	M4FIA5_BRARP	Uncharacterized protein. (411 aa)
	M4FIS8_BRARP	Uncharacterized protein. (1047 aa)
	M4CPA7_BRARP	CID domain-containing protein. (465 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CGZ1_BRARP	M4CZD5_BRARP	M4CGZ1	M4CZD5	Uncharacterized protein.	Uncharacterized protein.	0.872
M4CGZ1_BRARP	M4D9K2_BRARP	M4CGZ1	M4D9K2	Uncharacterized protein.	Uncharacterized protein.	0.843
M4CGZ1_BRARP	M4DZR4_BRARP	M4CGZ1	M4DZR4	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.493
M4CGZ1_BRARP	M4E8D7_BRARP	M4CGZ1	M4E8D7	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.493
M4CGZ1_BRARP	M4EKL5_BRARP	M4CGZ1	M4EKL5	Uncharacterized protein.	Uncharacterized protein.	0.830
M4CGZ1_BRARP	M4F4E0_BRARP	M4CGZ1	M4F4E0	Uncharacterized protein.	Uncharacterized protein.	0.830
M4CGZ1_BRARP	M4FIA5_BRARP	M4CGZ1	M4FIA5	Uncharacterized protein.	Uncharacterized protein.	0.874
M4CIY7_BRARP	M4CM28_BRARP	M4CIY7	M4CM28	C2H2-type domain-containing protein.	Uncharacterized protein.	0.928
M4CIY7_BRARP	M4CP69_BRARP	M4CIY7	M4CP69	C2H2-type domain-containing protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.442
M4CIY7_BRARP	M4CPA7_BRARP	M4CIY7	M4CPA7	C2H2-type domain-containing protein.	CID domain-containing protein.	0.658
M4CIY7_BRARP	M4CXW4_BRARP	M4CIY7	M4CXW4	C2H2-type domain-containing protein.	Uncharacterized protein.	0.658
M4CIY7_BRARP	M4D0B9_BRARP	M4CIY7	M4D0B9	C2H2-type domain-containing protein.	Uncharacterized protein.	0.758
M4CIY7_BRARP	M4D9K2_BRARP	M4CIY7	M4D9K2	C2H2-type domain-containing protein.	Uncharacterized protein.	0.526
M4CIY7_BRARP	M4DL52_BRARP	M4CIY7	M4DL52	C2H2-type domain-containing protein.	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	0.851
M4CIY7_BRARP	M4DVL3_BRARP	M4CIY7	M4DVL3	C2H2-type domain-containing protein.	RTR1-type domain-containing protein.	0.758
M4CIY7_BRARP	M4E8Y4_BRARP	M4CIY7	M4E8Y4	C2H2-type domain-containing protein.	CID domain-containing protein.	0.658
M4CIY7_BRARP	M4EK89_BRARP	M4CIY7	M4EK89	C2H2-type domain-containing protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.442
M4CIY7_BRARP	M4EL59_BRARP	M4CIY7	M4EL59	C2H2-type domain-containing protein.	CID domain-containing protein.	0.963
M4CIY7_BRARP	M4FDC9_BRARP	M4CIY7	M4FDC9	C2H2-type domain-containing protein.	CID domain-containing protein.	0.658
M4CIY7_BRARP	M4FIA5_BRARP	M4CIY7	M4FIA5	C2H2-type domain-containing protein.	Uncharacterized protein.	0.418

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