(6 nodes) Intralumenal vesicle formation network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4E5V6_BRARP	Uncharacterized protein. (213 aa)
	M4DIZ9_BRARP	FYVE-type domain-containing protein. (553 aa)
	M4EAI5_BRARP	Uncharacterized protein. (201 aa)
	M4CYS6_BRARP	Uncharacterized protein. (218 aa)
	M4D3N1_BRARP	Uncharacterized protein. (212 aa)
	M4D9K3_BRARP	Uncharacterized protein. (225 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CYS6_BRARP	M4D3N1_BRARP	M4CYS6	M4D3N1	Uncharacterized protein.	Uncharacterized protein.	0.975
M4CYS6_BRARP	M4D9K3_BRARP	M4CYS6	M4D9K3	Uncharacterized protein.	Uncharacterized protein.	0.928
M4CYS6_BRARP	M4DIZ9_BRARP	M4CYS6	M4DIZ9	Uncharacterized protein.	FYVE-type domain-containing protein.	0.540
M4CYS6_BRARP	M4E5V6_BRARP	M4CYS6	M4E5V6	Uncharacterized protein.	Uncharacterized protein.	0.975
M4CYS6_BRARP	M4EAI5_BRARP	M4CYS6	M4EAI5	Uncharacterized protein.	Uncharacterized protein.	0.540
M4D3N1_BRARP	M4CYS6_BRARP	M4D3N1	M4CYS6	Uncharacterized protein.	Uncharacterized protein.	0.975
M4D3N1_BRARP	M4D9K3_BRARP	M4D3N1	M4D9K3	Uncharacterized protein.	Uncharacterized protein.	0.944
M4D3N1_BRARP	M4DIZ9_BRARP	M4D3N1	M4DIZ9	Uncharacterized protein.	FYVE-type domain-containing protein.	0.587
M4D3N1_BRARP	M4E5V6_BRARP	M4D3N1	M4E5V6	Uncharacterized protein.	Uncharacterized protein.	0.544
M4D3N1_BRARP	M4EAI5_BRARP	M4D3N1	M4EAI5	Uncharacterized protein.	Uncharacterized protein.	0.587
M4D9K3_BRARP	M4CYS6_BRARP	M4D9K3	M4CYS6	Uncharacterized protein.	Uncharacterized protein.	0.928
M4D9K3_BRARP	M4D3N1_BRARP	M4D9K3	M4D3N1	Uncharacterized protein.	Uncharacterized protein.	0.944
M4D9K3_BRARP	M4DIZ9_BRARP	M4D9K3	M4DIZ9	Uncharacterized protein.	FYVE-type domain-containing protein.	0.769
M4D9K3_BRARP	M4E5V6_BRARP	M4D9K3	M4E5V6	Uncharacterized protein.	Uncharacterized protein.	0.944
M4D9K3_BRARP	M4EAI5_BRARP	M4D9K3	M4EAI5	Uncharacterized protein.	Uncharacterized protein.	0.769
M4DIZ9_BRARP	M4CYS6_BRARP	M4DIZ9	M4CYS6	FYVE-type domain-containing protein.	Uncharacterized protein.	0.540
M4DIZ9_BRARP	M4D3N1_BRARP	M4DIZ9	M4D3N1	FYVE-type domain-containing protein.	Uncharacterized protein.	0.587
M4DIZ9_BRARP	M4D9K3_BRARP	M4DIZ9	M4D9K3	FYVE-type domain-containing protein.	Uncharacterized protein.	0.769
M4DIZ9_BRARP	M4E5V6_BRARP	M4DIZ9	M4E5V6	FYVE-type domain-containing protein.	Uncharacterized protein.	0.587
M4DIZ9_BRARP	M4EAI5_BRARP	M4DIZ9	M4EAI5	FYVE-type domain-containing protein.	Uncharacterized protein.	0.542

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