STRINGSTRING
LSM8-2 LSM8-2 M4FFZ4_BRARP M4FFZ4_BRARP M4E1W9_BRARP M4E1W9_BRARP M4E6Q4_BRARP M4E6Q4_BRARP M4DIY4_BRARP M4DIY4_BRARP M4DHJ4_BRARP M4DHJ4_BRARP M4DGZ1_BRARP M4DGZ1_BRARP LSM3-3 LSM3-3 M4DEL6_BRARP M4DEL6_BRARP M4DYK5_BRARP M4DYK5_BRARP M4CCW3_BRARP M4CCW3_BRARP M4CAN1_BRARP M4CAN1_BRARP M4C9I1_BRARP M4C9I1_BRARP M4C7M0_BRARP M4C7M0_BRARP M4EP09_BRARP M4EP09_BRARP M4ETK3_BRARP M4ETK3_BRARP M4F188_BRARP M4F188_BRARP M4F8T4_BRARP M4F8T4_BRARP M4FCE6_BRARP M4FCE6_BRARP M4EAM1_BRARP M4EAM1_BRARP LSM3-4 LSM3-4 M4EH49_BRARP M4EH49_BRARP M4EKZ7_BRARP M4EKZ7_BRARP M4FE60_BRARP M4FE60_BRARP M4ELJ4_BRARP M4ELJ4_BRARP M4DKE9_BRARP M4DKE9_BRARP M4DNS5_BRARP M4DNS5_BRARP M4DPP6_BRARP M4DPP6_BRARP M4DQM1_BRARP M4DQM1_BRARP M4DWL0_BRARP M4DWL0_BRARP M4DD21_BRARP M4DD21_BRARP M4DAV6_BRARP M4DAV6_BRARP M4DAN5_BRARP M4DAN5_BRARP M4D6X6_BRARP M4D6X6_BRARP M4CXG2_BRARP M4CXG2_BRARP LSM3-2 LSM3-2 M4CU12_BRARP M4CU12_BRARP M4CQQ3_BRARP M4CQQ3_BRARP M4CPK5_BRARP M4CPK5_BRARP M4CPK4_BRARP M4CPK4_BRARP LSM8 LSM8 LSM3 LSM3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LSM8-2U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
M4FFZ4_BRARPSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (112 aa)
M4E1W9_BRARPUncharacterized protein. (135 aa)
M4E6Q4_BRARPSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
M4DIY4_BRARPSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (97 aa)
M4DHJ4_BRARPUncharacterized protein. (512 aa)
M4DGZ1_BRARPSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (127 aa)
LSM3-3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
M4DEL6_BRARPSplicing factor subunit; Belongs to the SF3B5 family. (87 aa)
M4DYK5_BRARPUncharacterized protein. (110 aa)
M4CCW3_BRARPSmall nuclear ribonucleoprotein G. (79 aa)
M4CAN1_BRARPSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (168 aa)
M4C9I1_BRARPSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (115 aa)
M4C7M0_BRARPPRP38_assoc domain-containing protein. (352 aa)
M4EP09_BRARPSm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
M4ETK3_BRARPSmall nuclear ribonucleoprotein G. (80 aa)
M4F188_BRARPSmall nuclear ribonucleoprotein G. (79 aa)
M4F8T4_BRARPUncharacterized protein. (99 aa)
M4FCE6_BRARPUncharacterized protein. (75 aa)
M4EAM1_BRARPSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (130 aa)
LSM3-4U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (93 aa)
M4EH49_BRARPPRP38_assoc domain-containing protein. (384 aa)
M4EKZ7_BRARPRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (96 aa)
M4FE60_BRARPUncharacterized protein. (901 aa)
M4ELJ4_BRARPSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (118 aa)
M4DKE9_BRARPPRP38_assoc domain-containing protein. (394 aa)
M4DNS5_BRARPUncharacterized protein. (293 aa)
M4DPP6_BRARPRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
M4DQM1_BRARPMatrin-type domain-containing protein. (246 aa)
M4DWL0_BRARPPSP domain-containing protein. (576 aa)
M4DD21_BRARPSmall nuclear ribonucleoprotein Sm D2. (105 aa)
M4DAV6_BRARPRibonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
M4DAN5_BRARPPSP domain-containing protein. (576 aa)
M4D6X6_BRARPUncharacterized protein. (63 aa)
M4CXG2_BRARPRRM domain-containing protein. (124 aa)
LSM3-2U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
M4CU12_BRARPSmall nuclear ribonucleoprotein Sm D2. (125 aa)
M4CQQ3_BRARPRibosomal_L7Ae domain-containing protein. (102 aa)
M4CPK5_BRARPUncharacterized protein. (131 aa)
M4CPK4_BRARPRRM domain-containing protein. (124 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.