(8 nodes) pre-mRNA intronic binding network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CH65_BRARP	PROCT domain-containing protein. (53 aa)
	M4CLI8_BRARP	PRP8_domainIV domain-containing protein. (267 aa)
	M4CLI9_BRARP	MPN domain-containing protein. (2289 aa)
	M4DAC1_BRARP	MPN domain-containing protein. (2369 aa)
	M4DPY3_BRARP	Uncharacterized protein. (440 aa)
	M4DYV5_BRARP	MPN domain-containing protein. (2338 aa)
	M4E9W2_BRARP	Uncharacterized protein. (545 aa)
	M4EKZ3_BRARP	PRP8_domainIV domain-containing protein. (87 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CH65_BRARP	M4DPY3_BRARP	M4CH65	M4DPY3	PROCT domain-containing protein.	Uncharacterized protein.	0.792
M4CLI8_BRARP	M4DPY3_BRARP	M4CLI8	M4DPY3	PRP8_domainIV domain-containing protein.	Uncharacterized protein.	0.792
M4CLI9_BRARP	M4DAC1_BRARP	M4CLI9	M4DAC1	MPN domain-containing protein.	MPN domain-containing protein.	0.543
M4CLI9_BRARP	M4DPY3_BRARP	M4CLI9	M4DPY3	MPN domain-containing protein.	Uncharacterized protein.	0.792
M4CLI9_BRARP	M4DYV5_BRARP	M4CLI9	M4DYV5	MPN domain-containing protein.	MPN domain-containing protein.	0.543
M4DAC1_BRARP	M4CLI9_BRARP	M4DAC1	M4CLI9	MPN domain-containing protein.	MPN domain-containing protein.	0.543
M4DAC1_BRARP	M4DPY3_BRARP	M4DAC1	M4DPY3	MPN domain-containing protein.	Uncharacterized protein.	0.792
M4DAC1_BRARP	M4DYV5_BRARP	M4DAC1	M4DYV5	MPN domain-containing protein.	MPN domain-containing protein.	0.900
M4DPY3_BRARP	M4CH65_BRARP	M4DPY3	M4CH65	Uncharacterized protein.	PROCT domain-containing protein.	0.792
M4DPY3_BRARP	M4CLI8_BRARP	M4DPY3	M4CLI8	Uncharacterized protein.	PRP8_domainIV domain-containing protein.	0.792
M4DPY3_BRARP	M4CLI9_BRARP	M4DPY3	M4CLI9	Uncharacterized protein.	MPN domain-containing protein.	0.792
M4DPY3_BRARP	M4DAC1_BRARP	M4DPY3	M4DAC1	Uncharacterized protein.	MPN domain-containing protein.	0.792
M4DPY3_BRARP	M4DYV5_BRARP	M4DPY3	M4DYV5	Uncharacterized protein.	MPN domain-containing protein.	0.792
M4DPY3_BRARP	M4EKZ3_BRARP	M4DPY3	M4EKZ3	Uncharacterized protein.	PRP8_domainIV domain-containing protein.	0.792
M4DYV5_BRARP	M4CLI9_BRARP	M4DYV5	M4CLI9	MPN domain-containing protein.	MPN domain-containing protein.	0.543
M4DYV5_BRARP	M4DAC1_BRARP	M4DYV5	M4DAC1	MPN domain-containing protein.	MPN domain-containing protein.	0.900
M4DYV5_BRARP	M4DPY3_BRARP	M4DYV5	M4DPY3	MPN domain-containing protein.	Uncharacterized protein.	0.792
M4EKZ3_BRARP	M4DPY3_BRARP	M4EKZ3	M4DPY3	PRP8_domainIV domain-containing protein.	Uncharacterized protein.	0.792

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