60 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4E5Y8_BRARP	Uncharacterized protein. (1161 aa)
	M4EE66_BRARP	Uncharacterized protein. (459 aa)
	M4EFL2_BRARP	Uncharacterized protein. (2222 aa)
	M4EP84_BRARP	Uncharacterized protein. (827 aa)
	M4ERH6_BRARP	Uncharacterized protein. (460 aa)
	M4ERM6_BRARP	Uncharacterized protein. (1185 aa)
	M4ES56_BRARP	Uncharacterized protein. (581 aa)
	M4ESE8_BRARP	Helicase C-terminal domain-containing protein. (97 aa)
	M4ETW5_BRARP	Uncharacterized protein. (672 aa)
	M4EUR2_BRARP	Uncharacterized protein. (1643 aa)
	M4EXZ3_BRARP	Uncharacterized protein. (1019 aa)
	M4FGK9_BRARP	Uncharacterized protein. (1100 aa)
	M4FGJ3_BRARP	Uncharacterized protein. (1049 aa)
	M4FDX5_BRARP	Uncharacterized protein. (2137 aa)
	M4FBV7_BRARP	Uncharacterized protein. (1219 aa)
	M4FAY5_BRARP	Helicase ATP-binding domain-containing protein. (683 aa)
	M4F7Z7_BRARP	Uncharacterized protein. (1686 aa)
	M4F7T9_BRARP	Uncharacterized protein. (1199 aa)
	M4F424_BRARP	Uncharacterized protein. (1034 aa)
	M4F2Y6_BRARP	SNF2_N domain-containing protein. (140 aa)
	M4C7D6_BRARP	Uncharacterized protein. (3275 aa)
	M4C881_BRARP	Uncharacterized protein. (2162 aa)
	M4C9K9_BRARP	Helicase ATP-binding domain-containing protein. (459 aa)
	M4CC41_BRARP	Uncharacterized protein. (825 aa)
	M4CCL4_BRARP	Uncharacterized protein. (1066 aa)
	M4CD92_BRARP	Uncharacterized protein. (1064 aa)
	M4CDM1_BRARP	Uncharacterized protein. (1246 aa)
	M4CKZ5_BRARP	Helicase C-terminal domain-containing protein. (647 aa)
	M4CM20_BRARP	Uncharacterized protein. (459 aa)
	M4CP16_BRARP	Uncharacterized protein. (1174 aa)
	M4CQZ3_BRARP	Uncharacterized protein. (1027 aa)
	M4F0Y2_BRARP	Uncharacterized protein. (2019 aa)
	M4EYS0_BRARP	Uncharacterized protein. (173 aa)
	M4CS69_BRARP	Uncharacterized protein. (2048 aa)
	M4CSX6_BRARP	Uncharacterized protein. (1496 aa)
	M4CUC0_BRARP	Uncharacterized protein. (1365 aa)
	M4CXZ2_BRARP	Uncharacterized protein. (836 aa)
	M4D4A6_BRARP	Uncharacterized protein. (755 aa)
	M4D4A7_BRARP	Uncharacterized protein. (1214 aa)
	M4D6J0_BRARP	Uncharacterized protein. (771 aa)
	M4D6R2_BRARP	Uncharacterized protein. (568 aa)
	M4DAK6_BRARP	Uncharacterized protein. (396 aa)
	M4DDR4_BRARP	Uncharacterized protein. (1514 aa)
	M4DE94_BRARP	Uncharacterized protein. (1228 aa)
	M4DEA4_BRARP	Uncharacterized protein. (226 aa)
	M4DEW3_BRARP	Uncharacterized protein. (1042 aa)
	M4DFW6_BRARP	Uncharacterized protein. (841 aa)
	M4DFW9_BRARP	Uncharacterized protein. (782 aa)
	M4DG07_BRARP	Uncharacterized protein. (1583 aa)
	M4DKE3_BRARP	Uncharacterized protein. (1586 aa)
	M4DLP1_BRARP	Uncharacterized protein. (762 aa)
	M4DQ21_BRARP	Uncharacterized protein. (2591 aa)
	M4DQQ4_BRARP	Uncharacterized protein. (960 aa)
	M4DW57_BRARP	Uncharacterized protein. (1053 aa)
	M4DX12_BRARP	Uncharacterized protein. (1271 aa)
	M4DZ94_BRARP	Uncharacterized protein. (764 aa)
	M4E0U8_BRARP	Uncharacterized protein. (913 aa)
	M4E4I6_BRARP	Uncharacterized protein. (1101 aa)
	M4E5C0_BRARP	Uncharacterized protein. (567 aa)
	M4E646_BRARP	Uncharacterized protein. (1153 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C7D6_BRARP	M4C9K9_BRARP	M4C7D6	M4C9K9	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.742
M4C7D6_BRARP	M4CC41_BRARP	M4C7D6	M4CC41	Uncharacterized protein.	Uncharacterized protein.	0.799
M4C7D6_BRARP	M4CCL4_BRARP	M4C7D6	M4CCL4	Uncharacterized protein.	Uncharacterized protein.	0.801
M4C7D6_BRARP	M4CD92_BRARP	M4C7D6	M4CD92	Uncharacterized protein.	Uncharacterized protein.	0.784
M4C7D6_BRARP	M4CDM1_BRARP	M4C7D6	M4CDM1	Uncharacterized protein.	Uncharacterized protein.	0.794
M4C7D6_BRARP	M4CKZ5_BRARP	M4C7D6	M4CKZ5	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.797
M4C7D6_BRARP	M4CM20_BRARP	M4C7D6	M4CM20	Uncharacterized protein.	Uncharacterized protein.	0.747
M4C7D6_BRARP	M4CP16_BRARP	M4C7D6	M4CP16	Uncharacterized protein.	Uncharacterized protein.	0.793
M4C7D6_BRARP	M4CQZ3_BRARP	M4C7D6	M4CQZ3	Uncharacterized protein.	Uncharacterized protein.	0.796
M4C7D6_BRARP	M4CS69_BRARP	M4C7D6	M4CS69	Uncharacterized protein.	Uncharacterized protein.	0.401
M4C7D6_BRARP	M4CSX6_BRARP	M4C7D6	M4CSX6	Uncharacterized protein.	Uncharacterized protein.	0.801
M4C7D6_BRARP	M4CUC0_BRARP	M4C7D6	M4CUC0	Uncharacterized protein.	Uncharacterized protein.	0.798
M4C7D6_BRARP	M4CXZ2_BRARP	M4C7D6	M4CXZ2	Uncharacterized protein.	Uncharacterized protein.	0.795
M4C7D6_BRARP	M4D4A6_BRARP	M4C7D6	M4D4A6	Uncharacterized protein.	Uncharacterized protein.	0.806
M4C7D6_BRARP	M4D4A7_BRARP	M4C7D6	M4D4A7	Uncharacterized protein.	Uncharacterized protein.	0.795
M4C7D6_BRARP	M4D6J0_BRARP	M4C7D6	M4D6J0	Uncharacterized protein.	Uncharacterized protein.	0.771
M4C7D6_BRARP	M4D6R2_BRARP	M4C7D6	M4D6R2	Uncharacterized protein.	Uncharacterized protein.	0.788
M4C7D6_BRARP	M4DAK6_BRARP	M4C7D6	M4DAK6	Uncharacterized protein.	Uncharacterized protein.	0.747
M4C7D6_BRARP	M4DDR4_BRARP	M4C7D6	M4DDR4	Uncharacterized protein.	Uncharacterized protein.	0.799
M4C7D6_BRARP	M4DE94_BRARP	M4C7D6	M4DE94	Uncharacterized protein.	Uncharacterized protein.	0.846

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