6 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4DLS2_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family. (141 aa)
	M4DHA1_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (211 aa)
	M4CHU3_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (145 aa)
	M4CFJ1_BRARP	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (199 aa)
	M4E1T4_BRARP	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (201 aa)
	M4DLS1_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family. (96 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CFJ1_BRARP	M4CHU3_BRARP	M4CFJ1	M4CHU3	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.958
M4CFJ1_BRARP	M4DHA1_BRARP	M4CFJ1	M4DHA1	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.958
M4CFJ1_BRARP	M4DLS1_BRARP	M4CFJ1	M4DLS1	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	0.954
M4CFJ1_BRARP	M4DLS2_BRARP	M4CFJ1	M4DLS2	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	0.954
M4CHU3_BRARP	M4CFJ1_BRARP	M4CHU3	M4CFJ1	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.958
M4CHU3_BRARP	M4DHA1_BRARP	M4CHU3	M4DHA1	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.543
M4CHU3_BRARP	M4DLS1_BRARP	M4CHU3	M4DLS1	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	0.925
M4CHU3_BRARP	M4DLS2_BRARP	M4CHU3	M4DLS2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	0.925
M4CHU3_BRARP	M4E1T4_BRARP	M4CHU3	M4E1T4	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.958
M4DHA1_BRARP	M4CFJ1_BRARP	M4DHA1	M4CFJ1	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.958
M4DHA1_BRARP	M4CHU3_BRARP	M4DHA1	M4CHU3	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.543
M4DHA1_BRARP	M4DLS1_BRARP	M4DHA1	M4DLS1	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	0.925
M4DHA1_BRARP	M4DLS2_BRARP	M4DHA1	M4DLS2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	0.925
M4DHA1_BRARP	M4E1T4_BRARP	M4DHA1	M4E1T4	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.958
M4DLS1_BRARP	M4CFJ1_BRARP	M4DLS1	M4CFJ1	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.954
M4DLS1_BRARP	M4CHU3_BRARP	M4DLS1	M4CHU3	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.925
M4DLS1_BRARP	M4DHA1_BRARP	M4DLS1	M4DHA1	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.925
M4DLS1_BRARP	M4E1T4_BRARP	M4DLS1	M4E1T4	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.954
M4DLS2_BRARP	M4CFJ1_BRARP	M4DLS2	M4CFJ1	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.954
M4DLS2_BRARP	M4CHU3_BRARP	M4DLS2	M4CHU3	Uncharacterized protein; Belongs to the universal ribosomal protein uS17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.925

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