25 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4FEK5_BRARP	Uncharacterized protein. (102 aa)
	M4CBZ0_BRARP	Uncharacterized protein. (134 aa)
	M4CCD3_BRARP	Ribosomal_S10 domain-containing protein. (223 aa)
	M4CCJ2_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (139 aa)
	M4CV65_BRARP	Uncharacterized protein. (254 aa)
	M4CVT5_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (154 aa)
	M4CWB5_BRARP	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (500 aa)
	M4DER3_BRARP	RRM domain-containing protein; Belongs to the universal ribosomal protein uS19 family. (252 aa)
	M4DGD9_BRARP	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family. (279 aa)
	M4DGN2_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (154 aa)
	M4DJF0_BRARP	Uncharacterized protein. (135 aa)
	M4DNC2_BRARP	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (406 aa)
	M4DST4_BRARP	Uncharacterized protein. (105 aa)
	M4DZD2_BRARP	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (302 aa)
	M4E0K1_BRARP	MRP-S28 domain-containing protein. (424 aa)
	M4E0Q5_BRARP	Uncharacterized protein. (133 aa)
	M4E357_BRARP	Uncharacterized protein. (309 aa)
	M4E8K6_BRARP	Uncharacterized protein. (102 aa)
	M4EB61_BRARP	Uncharacterized protein. (485 aa)
	M4EFK1_BRARP	Uncharacterized protein. (102 aa)
	M4EHT1_BRARP	RRM domain-containing protein; Belongs to the universal ribosomal protein uS19 family. (233 aa)
	M4ERC4_BRARP	Ribosomal_S10 domain-containing protein. (230 aa)
	M4ERY0_BRARP	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family. (237 aa)
	M4ET54_BRARP	Uncharacterized protein. (207 aa)
	M4EYI2_BRARP	Uncharacterized protein. (86 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CBZ0_BRARP	M4CCD3_BRARP	M4CBZ0	M4CCD3	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.676
M4CBZ0_BRARP	M4CCJ2_BRARP	M4CBZ0	M4CCJ2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.907
M4CBZ0_BRARP	M4CV65_BRARP	M4CBZ0	M4CV65	Uncharacterized protein.	Uncharacterized protein.	0.982
M4CBZ0_BRARP	M4CVT5_BRARP	M4CBZ0	M4CVT5	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.974
M4CBZ0_BRARP	M4CWB5_BRARP	M4CBZ0	M4CWB5	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.997
M4CBZ0_BRARP	M4DER3_BRARP	M4CBZ0	M4DER3	Uncharacterized protein.	RRM domain-containing protein; Belongs to the universal ribosomal protein uS19 family.	0.907
M4CBZ0_BRARP	M4DGD9_BRARP	M4CBZ0	M4DGD9	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.984
M4CBZ0_BRARP	M4DGN2_BRARP	M4CBZ0	M4DGN2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.974
M4CBZ0_BRARP	M4DJF0_BRARP	M4CBZ0	M4DJF0	Uncharacterized protein.	Uncharacterized protein.	0.973
M4CBZ0_BRARP	M4DNC2_BRARP	M4CBZ0	M4DNC2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.995
M4CBZ0_BRARP	M4DST4_BRARP	M4CBZ0	M4DST4	Uncharacterized protein.	Uncharacterized protein.	0.995
M4CBZ0_BRARP	M4DZD2_BRARP	M4CBZ0	M4DZD2	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.989
M4CBZ0_BRARP	M4E0K1_BRARP	M4CBZ0	M4E0K1	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.982
M4CBZ0_BRARP	M4E0Q5_BRARP	M4CBZ0	M4E0Q5	Uncharacterized protein.	Uncharacterized protein.	0.900
M4CBZ0_BRARP	M4E357_BRARP	M4CBZ0	M4E357	Uncharacterized protein.	Uncharacterized protein.	0.685
M4CBZ0_BRARP	M4E8K6_BRARP	M4CBZ0	M4E8K6	Uncharacterized protein.	Uncharacterized protein.	0.930
M4CBZ0_BRARP	M4EB61_BRARP	M4CBZ0	M4EB61	Uncharacterized protein.	Uncharacterized protein.	0.973
M4CBZ0_BRARP	M4EFK1_BRARP	M4CBZ0	M4EFK1	Uncharacterized protein.	Uncharacterized protein.	0.930
M4CBZ0_BRARP	M4EHT1_BRARP	M4CBZ0	M4EHT1	Uncharacterized protein.	RRM domain-containing protein; Belongs to the universal ribosomal protein uS19 family.	0.907
M4CBZ0_BRARP	M4ERC4_BRARP	M4CBZ0	M4ERC4	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.676

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