(68 nodes) Small nuclear ribonucleoprotein complex network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CT86_BRARP	RRM domain-containing protein. (79 aa)
	M4FIS8_BRARP	Uncharacterized protein. (1047 aa)
	LSM8-2	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	M4F9K7_BRARP	TOG domain-containing protein. (1268 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (129 aa)
	M4F4B8_BRARP	Uncharacterized protein. (122 aa)
	M4F2L9_BRARP	RRM domain-containing protein. (127 aa)
	M4F151_BRARP	CPSF_A domain-containing protein. (1452 aa)
	M4F0H6_BRARP	Uncharacterized protein. (962 aa)
	M4EZG5_BRARP	TPR_REGION domain-containing protein. (1015 aa)
	M4EZC9_BRARP	CPSF_A domain-containing protein. (1214 aa)
	M4EVN5_BRARP	Uncharacterized protein. (752 aa)
	M4ERU5_BRARP	Nop domain-containing protein. (486 aa)
	M4EP34_BRARP	Uncharacterized protein. (748 aa)
	M4EKZ3_BRARP	PRP8_domainIV domain-containing protein. (87 aa)
	M4EK58_BRARP	Uncharacterized protein. (335 aa)
	M4EF33_BRARP	tRNA-synt_1d domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (175 aa)
	M4EBJ0_BRARP	Nop domain-containing protein. (484 aa)
	M4EAF7_BRARP	Uncharacterized protein. (487 aa)
	M4E8B3_BRARP	Uncharacterized protein. (1006 aa)
	M4E6Q4_BRARP	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
	M4E677_BRARP	SF3b1 domain-containing protein. (1245 aa)
	M4E5P0_BRARP	Sm domain-containing protein. (90 aa)
	M4E5N9_BRARP	Sm domain-containing protein. (88 aa)
	M4E5G5_BRARP	RRM domain-containing protein. (78 aa)
	M4E4B5_BRARP	Uncharacterized protein. (410 aa)
	M4E0Z8_BRARP	Uncharacterized protein. (1119 aa)
	M4DZY0_BRARP	Uncharacterized protein. (254 aa)
	M4DYV5_BRARP	MPN domain-containing protein. (2338 aa)
	M4DWK4_BRARP	Uncharacterized protein. (294 aa)
	M4DS86_BRARP	Uncharacterized protein. (487 aa)
	M4DPY3_BRARP	Uncharacterized protein. (440 aa)
	M4DP83_BRARP	Uncharacterized protein. (228 aa)
	M4DK20_BRARP	Uncharacterized protein. (295 aa)
	M4DHH4_BRARP	Peptidase_M1 domain-containing protein. (1391 aa)
	M4DG72_BRARP	PRP3 domain-containing protein. (252 aa)
	M4DFT6_BRARP	Uncharacterized protein. (254 aa)
	M4DFL4_BRARP	Uncharacterized protein. (748 aa)
	M4DFB8_BRARP	Uncharacterized protein. (331 aa)
	M4DEL6_BRARP	Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
	M4DDF7_BRARP	Sm domain-containing protein. (92 aa)
	M4DD21_BRARP	Small nuclear ribonucleoprotein Sm D2. (105 aa)
	M4DBW7_BRARP	Uncharacterized protein. (399 aa)
	M4DAV3_BRARP	Uncharacterized protein. (504 aa)
	M4DAM7_BRARP	Uncharacterized protein. (294 aa)
	M4DAC1_BRARP	MPN domain-containing protein. (2369 aa)
	M4D9T4_BRARP	Uncharacterized protein. (152 aa)
	M4D6I9_BRARP	U1snRNP70_N domain-containing protein. (178 aa)
	M4D354_BRARP	Uncharacterized protein. (791 aa)
	M4CYT4_BRARP	OCRE domain-containing protein. (337 aa)
	M4CYN8_BRARP	Uncharacterized protein. (142 aa)
	M4CWN2_BRARP	RRM domain-containing protein. (500 aa)
	M4CU12_BRARP	Small nuclear ribonucleoprotein Sm D2. (125 aa)
	M4CTD5_BRARP	Sm domain-containing protein. (93 aa)
	M4CRU6_BRARP	Uncharacterized protein. (404 aa)
	M4CQL3_BRARP	Uncharacterized protein. (430 aa)
	M4CQB9_BRARP	Uncharacterized protein. (191 aa)
	M4CLI9_BRARP	MPN domain-containing protein. (2289 aa)
	M4CLI8_BRARP	PRP8_domainIV domain-containing protein. (267 aa)
	M4CK27_BRARP	Uncharacterized protein. (377 aa)
	M4CJR1_BRARP	Uncharacterized protein. (258 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	M4CH65_BRARP	PROCT domain-containing protein. (53 aa)
	M4CGQ8_BRARP	Sm domain-containing protein. (91 aa)
	M4CDE9_BRARP	Uncharacterized protein. (419 aa)
	M4CB52_BRARP	CPSF_A domain-containing protein. (1341 aa)
	M4C9E5_BRARP	Uncharacterized protein. (574 aa)
	M4C7X6_BRARP	RRM domain-containing protein. (321 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	LSM8	M4F6A6	M4CIU0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.995
LSM4	LSM8-2	M4F6A6	M4FF66	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.995
LSM4	M4C7X6_BRARP	M4F6A6	M4C7X6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RRM domain-containing protein.	0.813
LSM4	M4C9E5_BRARP	M4F6A6	M4C9E5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.981
LSM4	M4CB52_BRARP	M4F6A6	M4CB52	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	CPSF_A domain-containing protein.	0.913
LSM4	M4CGQ8_BRARP	M4F6A6	M4CGQ8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.995
LSM4	M4CH65_BRARP	M4F6A6	M4CH65	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PROCT domain-containing protein.	0.952
LSM4	M4CJR1_BRARP	M4F6A6	M4CJR1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.942
LSM4	M4CLI8_BRARP	M4F6A6	M4CLI8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PRP8_domainIV domain-containing protein.	0.952
LSM4	M4CLI9_BRARP	M4F6A6	M4CLI9	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	MPN domain-containing protein.	0.952
LSM4	M4CT86_BRARP	M4F6A6	M4CT86	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RRM domain-containing protein.	0.813
LSM4	M4CTD5_BRARP	M4F6A6	M4CTD5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.995
LSM4	M4CU12_BRARP	M4F6A6	M4CU12	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.991
LSM4	M4CYN8_BRARP	M4F6A6	M4CYN8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.978
LSM4	M4CYT4_BRARP	M4F6A6	M4CYT4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	OCRE domain-containing protein.	0.535
LSM4	M4D354_BRARP	M4F6A6	M4D354	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.977
LSM4	M4D6I9_BRARP	M4F6A6	M4D6I9	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1snRNP70_N domain-containing protein.	0.813
LSM4	M4D9T4_BRARP	M4F6A6	M4D9T4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.978
LSM4	M4DAC1_BRARP	M4F6A6	M4DAC1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	MPN domain-containing protein.	0.952
LSM4	M4DAV3_BRARP	M4F6A6	M4DAV3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.905

page 1 of 130

Server load: low (10%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About