(18 nodes) Retromer complex network (Brassica rapa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4CFR7_BRARP	Uncharacterized protein. (302 aa)
	M4CD11_BRARP	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (788 aa)
	M4CD10_BRARP	Uncharacterized protein. (302 aa)
	M4DH29_BRARP	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (807 aa)
	M4EC06_BRARP	Uncharacterized protein. (303 aa)
	M4F6V8_BRARP	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (793 aa)
	M4F838_BRARP	Uncharacterized protein. (283 aa)
	M4DNM3_BRARP	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (190 aa)
	M4DMK4_BRARP	Uncharacterized protein. (360 aa)
	M4EAI4_BRARP	Uncharacterized protein. (272 aa)
	M4DH28_BRARP	Uncharacterized protein. (290 aa)
	M4D593_BRARP	Uncharacterized protein. (317 aa)
	M4CYJ4_BRARP	PX domain-containing protein. (537 aa)
	M4E1K9_BRARP	Uncharacterized protein. (343 aa)
	M4DSM1_BRARP	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family. (190 aa)
	M4DQD9_BRARP	Uncharacterized protein. (327 aa)
	M4CY69_BRARP	PX domain-containing protein. (390 aa)
	M4CNY7_BRARP	PX domain-containing protein. (514 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4CD10_BRARP	M4CFR7_BRARP	M4CD10	M4CFR7	Uncharacterized protein.	Uncharacterized protein.	0.943
M4CD10_BRARP	M4CNY7_BRARP	M4CD10	M4CNY7	Uncharacterized protein.	PX domain-containing protein.	0.542
M4CD10_BRARP	M4CY69_BRARP	M4CD10	M4CY69	Uncharacterized protein.	PX domain-containing protein.	0.542
M4CD10_BRARP	M4CYJ4_BRARP	M4CD10	M4CYJ4	Uncharacterized protein.	PX domain-containing protein.	0.542
M4CD10_BRARP	M4DNM3_BRARP	M4CD10	M4DNM3	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.953
M4CD10_BRARP	M4DQD9_BRARP	M4CD10	M4DQD9	Uncharacterized protein.	Uncharacterized protein.	0.469
M4CD10_BRARP	M4DSM1_BRARP	M4CD10	M4DSM1	Uncharacterized protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.953
M4CD10_BRARP	M4E1K9_BRARP	M4CD10	M4E1K9	Uncharacterized protein.	Uncharacterized protein.	0.943
M4CD10_BRARP	M4EC06_BRARP	M4CD10	M4EC06	Uncharacterized protein.	Uncharacterized protein.	0.943
M4CD11_BRARP	M4CFR7_BRARP	M4CD11	M4CFR7	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.983
M4CD11_BRARP	M4CNY7_BRARP	M4CD11	M4CNY7	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.768
M4CD11_BRARP	M4CY69_BRARP	M4CD11	M4CY69	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.778
M4CD11_BRARP	M4CYJ4_BRARP	M4CD11	M4CYJ4	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.768
M4CD11_BRARP	M4DH29_BRARP	M4CD11	M4DH29	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.901
M4CD11_BRARP	M4DNM3_BRARP	M4CD11	M4DNM3	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.984
M4CD11_BRARP	M4DQD9_BRARP	M4CD11	M4DQD9	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.626
M4CD11_BRARP	M4DSM1_BRARP	M4CD11	M4DSM1	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.984
M4CD11_BRARP	M4E1K9_BRARP	M4CD11	M4E1K9	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.983
M4CD11_BRARP	M4EC06_BRARP	M4CD11	M4EC06	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.985
M4CD11_BRARP	M4F6V8_BRARP	M4CD11	M4F6V8	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.901

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