21 items (Brassica rapa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M4F149_BRARP	Uncharacterized protein. (1930 aa)
	M4EPU5_BRARP	Nop domain-containing protein. (519 aa)
	M4EIP1_BRARP	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (386 aa)
	M4E2H9_BRARP	Uncharacterized protein. (283 aa)
	M4DRK5_BRARP	Uncharacterized protein. (307 aa)
	M4DJB4_BRARP	Uncharacterized protein. (754 aa)
	M4DDC6_BRARP	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (228 aa)
	M4D1V5_BRARP	Uncharacterized protein. (291 aa)
	M4CTI5_BRARP	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (228 aa)
	M4CSV0_BRARP	Uncharacterized protein. (295 aa)
	M4CS07_BRARP	Uncharacterized protein. (228 aa)
	M4C7Y9_BRARP	Sas10 domain-containing protein. (652 aa)
	M4CK20_BRARP	PINc domain-containing protein. (196 aa)
	M4CMH5_BRARP	Uncharacterized protein. (120 aa)
	M4CNB4_BRARP	KH_8 domain-containing protein. (209 aa)
	M4FI56_BRARP	Nop domain-containing protein. (521 aa)
	M4FDW4_BRARP	PINc domain-containing protein. (196 aa)
	M4FC74_BRARP	Uncharacterized protein. (1948 aa)
	M4F9D2_BRARP	Sas10 domain-containing protein. (248 aa)
	M4F9D0_BRARP	Sas10 domain-containing protein. (149 aa)
	M4F8G1_BRARP	Uncharacterized protein. (307 aa)

Your Current Organism:

Brassica rapa

NCBI taxonomy Id: 51351
Other names: B. rapa subsp. pekinensis, Brassica campestris (Pekinensis Group), Brassica campestris subsp. pekinensis, Brassica campestris subsp. pekinensis (Lour.) G.Olsson, Brassica campestris var. pekinensis, Brassica pekinensis, Brassica rapa Chinese Cabbage Group, Brassica rapa subsp. pekinensis, Brassica rapa subsp. pekinensis (Lour.) Hanelt ex Mansf., Brassica rapa var. glabra, Brassica rapa var. glabra Regel, Brassica rapa var. pekinensis, Chinese cabbage, bai cai, celery cabbage, pe-tsai

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M4C7Y9_BRARP	M4CK20_BRARP	M4C7Y9	M4CK20	Sas10 domain-containing protein.	PINc domain-containing protein.	0.995
M4C7Y9_BRARP	M4CMH5_BRARP	M4C7Y9	M4CMH5	Sas10 domain-containing protein.	Uncharacterized protein.	0.880
M4C7Y9_BRARP	M4CNB4_BRARP	M4C7Y9	M4CNB4	Sas10 domain-containing protein.	KH_8 domain-containing protein.	0.998
M4C7Y9_BRARP	M4CS07_BRARP	M4C7Y9	M4CS07	Sas10 domain-containing protein.	Uncharacterized protein.	0.990
M4C7Y9_BRARP	M4CSV0_BRARP	M4C7Y9	M4CSV0	Sas10 domain-containing protein.	Uncharacterized protein.	0.993
M4C7Y9_BRARP	M4CTI5_BRARP	M4C7Y9	M4CTI5	Sas10 domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
M4C7Y9_BRARP	M4D1V5_BRARP	M4C7Y9	M4D1V5	Sas10 domain-containing protein.	Uncharacterized protein.	0.955
M4C7Y9_BRARP	M4DDC6_BRARP	M4C7Y9	M4DDC6	Sas10 domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.998
M4C7Y9_BRARP	M4DJB4_BRARP	M4C7Y9	M4DJB4	Sas10 domain-containing protein.	Uncharacterized protein.	0.996
M4C7Y9_BRARP	M4DRK5_BRARP	M4C7Y9	M4DRK5	Sas10 domain-containing protein.	Uncharacterized protein.	0.955
M4C7Y9_BRARP	M4E2H9_BRARP	M4C7Y9	M4E2H9	Sas10 domain-containing protein.	Uncharacterized protein.	0.942
M4C7Y9_BRARP	M4EIP1_BRARP	M4C7Y9	M4EIP1	Sas10 domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
M4C7Y9_BRARP	M4EPU5_BRARP	M4C7Y9	M4EPU5	Sas10 domain-containing protein.	Nop domain-containing protein.	0.954
M4C7Y9_BRARP	M4F149_BRARP	M4C7Y9	M4F149	Sas10 domain-containing protein.	Uncharacterized protein.	0.992
M4C7Y9_BRARP	M4F8G1_BRARP	M4C7Y9	M4F8G1	Sas10 domain-containing protein.	Uncharacterized protein.	0.936
M4C7Y9_BRARP	M4F9D2_BRARP	M4C7Y9	M4F9D2	Sas10 domain-containing protein.	Sas10 domain-containing protein.	0.544
M4C7Y9_BRARP	M4FC74_BRARP	M4C7Y9	M4FC74	Sas10 domain-containing protein.	Uncharacterized protein.	0.992
M4C7Y9_BRARP	M4FDW4_BRARP	M4C7Y9	M4FDW4	Sas10 domain-containing protein.	PINc domain-containing protein.	0.995
M4C7Y9_BRARP	M4FI56_BRARP	M4C7Y9	M4FI56	Sas10 domain-containing protein.	Nop domain-containing protein.	0.954
M4CK20_BRARP	M4C7Y9_BRARP	M4CK20	M4C7Y9	PINc domain-containing protein.	Sas10 domain-containing protein.	0.995

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